CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDA DK+R+ S+T  ++LGD   L IR+ PD  N
Sbjct:    3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNSSDACDKIRYQSLTNQAVLGDESHLRIRVVPDKAN 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_RAT (Heat shock protein HSP 90-beta OS=Rattus norvegicus GN=Hsp90ab1 PE=1 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_PONAB (Heat shock protein HSP 90-beta OS=Pongo abelii GN=HSP90AB1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_MACFA (Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_HUMAN (Heat shock protein HSP 90-beta OS=Homo sapiens GN=HSP90AB1 PE=1 SV=4)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_HORSE (Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_BOVIN (Heat shock protein HSP 90-beta OS=Bos taurus GN=HSP90AB1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 38/68 (55.88%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            E F +QAE+++LM LI+++ YS+KE+FLREL+SNASDALDK+R+ S+T+PS L    +L+I I P+P+
Sbjct:   13 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQ 80          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: ENPL_PONAB (Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            EKF +QAEV+R+M LI++SLY +KE+FLREL+SNASDALDK+R +S+T+ + L    +L ++IK D E
Sbjct:   74 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKE 141          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: ENPL_PIG (Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            EKF +QAEV+R+M LI++SLY +KE+FLREL+SNASDALDK+R +S+T+ + L    +L ++IK D E
Sbjct:   74 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE 141          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: ENPL_MOUSE (Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 39/68 (57.35%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            EKF +QAEV+R+M LI++SLY +KE+FLREL+SNASDALDK+R +S+T+ + L    +L ++IK D E
Sbjct:   74 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKE 141          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HSP85_TRYCR9.413e-1653.62Heat shock-like 85 kDa protein OS=Trypanosoma cruz... [more]
HS90B_RAT9.413e-1655.88Heat shock protein HSP 90-beta OS=Rattus norvegicu... [more]
HS90B_PONAB9.413e-1655.88Heat shock protein HSP 90-beta OS=Pongo abelii GN=... [more]
HS90B_MACFA9.413e-1655.88Heat shock protein HSP 90-beta OS=Macaca fascicula... [more]
HS90B_HUMAN9.413e-1655.88Heat shock protein HSP 90-beta OS=Homo sapiens GN=... [more]
HS90B_HORSE9.413e-1655.88Heat shock protein HSP 90-beta OS=Equus caballus G... [more]
HS90B_BOVIN9.413e-1655.88Heat shock protein HSP 90-beta OS=Bos taurus GN=HS... [more]
ENPL_PONAB9.413e-1657.35Endoplasmin OS=Pongo abelii GN=HSP90B1 PE=2 SV=1[more]
ENPL_PIG9.413e-1657.35Endoplasmin OS=Sus scrofa GN=HSP90B1 PE=2 SV=3[more]
ENPL_MOUSE9.413e-1657.35Endoplasmin OS=Mus musculus GN=Hsp90b1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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