CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_DESHY (Chaperone protein htpG OS=Desulfitobacterium hafniense (strain Y51) GN=htpG PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            E  E+Q E+ +L+D++++SLY+ +E+FLREL+SNA+DA +K+R++ ++  ++      LEIRI PD
Sbjct:    5 ETKEFQTEIRQLLDIVINSLYTDREIFLRELISNAADASEKVRYMQLSGQNVKDQELPLEIRITPD 70          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  340 MDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDP 504
            M LI+++ YS+KE+FL+EL+SNASDALDK+R+ S+T+PS L    +L+I I P+P
Sbjct:    1 MSLIINTFYSNKEIFLQELISNASDALDKIRYESLTDPSKLDGGKELKIDIIPNP 55          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_GEOSL (Chaperone protein htpG OS=Geobacter sulfurreducens GN=htpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 29/65 (44.62%), Postives = 50/65 (76.92%), Query Frame = 1
Query:  313 EYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            +++ EV +L+DL++HSLYS+K++FLREL+SNASDA+DK+ F S    +++    + +I++ PD +
Sbjct:    7 KFETEVQQLLDLVIHSLYSNKDIFLRELISNASDAIDKVLFESHQNAAVIEGEPEGKIKLIPDKD 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_DESPS (Chaperone protein htpG OS=Desulfotalea psychrophila GN=htpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 30/71 (42.25%), Postives = 52/71 (73.24%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            T  + +E+QAE  +L+D++++SLY+ ++VF+REL+SN++DAL+K+R  ++T   +L +   LEI I  D E
Sbjct:    2 TEAKNYEFQAETKKLLDIVINSLYTERDVFVRELISNSADALEKMRHEALTCQEVLDEDLPLEITIDLDEE 72          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_BUCBP (Chaperone protein htpG OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=htpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 29/67 (43.28%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  310 FEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            + +++E   L+ L++HSLYS++E+F REL+SNA+DA+DKL+F +++ P L  +  +L IRI  +  N
Sbjct:   11 YNFKSETKELLHLMIHSLYSNREIFFRELISNAADAIDKLKFNAISAPELYENDTNLYIRIFSNKNN 77          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ANAPZ (Chaperone protein htpG OS=Anaplasma phagocytophilum (strain HZ) GN=htpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 30/69 (43.48%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  304 EKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPEN 510
            E+ ++ AEV +++ L+VHSLY++K++FLREL+SNASDA DKLR   ++   L+ +  +L++ I  D ++
Sbjct:    5 EELKFDAEVGKVLSLVVHSLYTNKDIFLRELLSNASDACDKLRHEFLSNHDLMEEGEELKVVISVDKDS 73          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_DESHY6.981e-1143.94Chaperone protein htpG OS=Desulfitobacterium hafni... [more]
H90B4_HUMAN6.981e-1156.36Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
HTPG_GEOSL9.118e-1144.62Chaperone protein htpG OS=Geobacter sulfurreducens... [more]
HTPG_DESPS9.118e-1142.25Chaperone protein htpG OS=Desulfotalea psychrophil... [more]
HTPG_BUCBP9.118e-1143.28Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_ANAPZ9.118e-1143.48Chaperone protein htpG OS=Anaplasma phagocytophilu... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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