CX287287

Overview
NameCX287287
Unique NameCX287287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF5 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=htpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 36/70 (51.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            S E  ++Q E+++L+ L++HSLYS+KE+FLREL+SNASDA DKLRF ++ +P+LL    +L++ +  DPE
Sbjct:    4 SKETMQFQTEINQLLQLMIHSLYSNKEIFLRELISNASDACDKLRFEALADPALLTGDSELKVEVDFDPE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_ACIF2 (Chaperone protein htpG OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=htpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 36/70 (51.43%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            S E  ++Q E+++L+ L++HSLYS+KE+FLREL+SNASDA DKLRF ++ +P+LL    +L++ +  DPE
Sbjct:    4 SKETMQFQTEINQLLQLMIHSLYSNKEIFLRELISNASDACDKLRFEALADPALLTGDSELKVEVDFDPE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_XANC8 (Chaperone protein htpG OS=Xanthomonas campestris pv. campestris (strain 8004) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            DT  +   +Q EV +L+ L++HSLYS+KE+FLRELVSNA+DA DKLRF ++ +P LL  +G+L IR+  D +
Sbjct:    4 DTDKQTLGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFEALVKPDLLEGSGELRIRVDFDKD 75          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_SALTO (Chaperone protein htpG OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=htpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            S E  E+QAE  +L+ L+VHS+YS+K+VFLREL+SNASDALDKLR  S+ +  L  D  DL I I+ DP+
Sbjct:    2 SSETLEFQAEARQLLQLMVHSIYSNKDVFLRELISNASDALDKLRLASLRDKDLDVDTADLHIAIEIDPD 71          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_RHOPA (Chaperone protein htpG OS=Rhodopseudomonas palustris GN=htpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKP 498
            DT+ E   +QAEV+ L++L+VHS+YS  ++FLREL+SNASDALDKLR+ S+ +P L+   G+ +IRI P
Sbjct:    5 DTASETKPFQAEVAELLNLMVHSVYSETDIFLRELISNASDALDKLRYESIAKPELMEKGGEPKIRIIP 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HTPG_PASMU (Chaperone protein htpG OS=Pasteurella multocida GN=htpG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  295 TSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            T+ E   +Q+EV +L+ L++HSLYS+KE+FLREL+SNASDA DKLRF +++ P L    GDL++RI+ D E
Sbjct:    3 TNQETRGFQSEVKQLLQLMIHSLYSNKEIFLRELISNASDAADKLRFKALSVPELYEGDGDLKVRIRFDEE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            + E F +QAE+++LM LI+++ YS+KE++LREL+SNASDALDK+R+ ++TEPS L    +L I+I P+ E
Sbjct:    4 NAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  298 SGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPDPE 507
            + E F +QAE+++LM LI+++ YS+KE++LREL+SNASDALDK+R+ ++TEPS L    +L I+I P+ E
Sbjct:    4 NAETFAFQAEIAQLMSLIINTFYSNKEIYLRELISNASDALDKIRYQALTEPSELDTGKELFIKITPNKE 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 36/70 (51.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            + +GE F +QAE+++LM LI+++ YS+KE+FLREL+SN+SDALDK+R+ ++TEP+ L    +L I+I P+
Sbjct:    4 EMNGETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYQALTEPAELETGKELYIKITPN 73          
BLAST of CX287287 vs. ExPASy Swiss-Prot
Match: HS90B_DANRE (Heat shock protein HSP 90-beta OS=Danio rerio GN=hsp90ab1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 38/70 (54.29%), Postives = 55/70 (78.57%), Query Frame = 1
Query:  292 DTSGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGDAGDLEIRIKPD 501
            +   E F +QAE+++LM LI+++ YS+KE+FLRELVSNASDALDK+R+ S+T+P+ L    DL+I I P+
Sbjct:    8 EEEAETFAFQAEIAQLMSLIINTFYSNKEIFLRELVSNASDALDKIRYESLTDPTKLDSGKDLKIDIIPN 77          
The following BLAST results are available for this feature:
BLAST of CX287287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 366
Match NameE-valueIdentityDescription
HTPG_ACIF53.577e-1551.43Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_ACIF23.577e-1551.43Chaperone protein htpG OS=Acidithiobacillus ferroo... [more]
HTPG_XANC84.672e-1552.78Chaperone protein htpG OS=Xanthomonas campestris p... [more]
HTPG_SALTO4.672e-1557.14Chaperone protein htpG OS=Salinispora tropica (str... [more]
HTPG_RHOPA4.672e-1555.07Chaperone protein htpG OS=Rhodopseudomonas palustr... [more]
HTPG_PASMU4.672e-1554.93Chaperone protein htpG OS=Pasteurella multocida GN... [more]
HSP90_CAEEL4.672e-1552.86Heat shock protein 90 OS=Caenorhabditis elegans GN... [more]
HSP90_CAEBR4.672e-1552.86Heat shock protein 90 OS=Caenorhabditis briggsae G... [more]
HSP90_BRUPA4.672e-1551.43Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P... [more]
HS90B_DANRE4.672e-1554.29Heat shock protein HSP 90-beta OS=Danio rerio GN=h... [more]

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Properties
Property NameValue
Genbank descriptionC01006H04SK Veg1 Citrus clementina cDNA clone C01006H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287287 ID=CX287287; Name=CX287287; organism=Citrus clementina; type=EST; length=557bp
GTTCAAACCATCTTATTAAGCCAGCCCATTATCTTCTTCTCTCTCTGTAT
TCGAAGCCTTTTAATGGCTCCAGTTCTGAGCAGAACATTAGCCACTACCT
CTTTAGTGTCACTTCCAACTTCAACTCCTTTTTCTTTTAAACACTCCAAC
AACAAGGCCTTCAATTTCAGAAGCGCTTTTTTGCCGAGAAGTGGCGGCTT
AACTTGTGCTGGATTGAAGTGGAACCTTCAGAAGAGGAATAAAAGAGTCG
GGATACGGTGTGATGCTGCTGTTGCTGACAAAGAGGCCCCTGATACTTCT
GGTGAGAAGTTCGAGTACCAAGCCGAGGTCAGTCGCCTGATGGACTTGAT
TGTTCATAGTCTGTACAGCCACAAGGAGGTGTTCCTGCGAGAGCTTGTGA
GCAATGCAAGTGATGCTTTGGATAAGTTGAGATTTTTAAGTGTTACCGAG
CCCTCTCTTCTTGGAGATGCTGGCGATCTTGAGATTCGCATCAAGCCTGA
TCCAGAAAATGGGACCATCACCATAACGGATACTGGTATTGGAATGACTA
AAGAAGA
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