CX287325
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHIBS (Putrescine aminotransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=patA PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16 Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N++ Q + DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLLAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHISS (Putrescine aminotransferase OS=Shigella sonnei (strain Ss046) GN=patA PE=3 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 4.538e-16 Identity = 41/127 (32.28%), Postives = 69/127 (54.33%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q ++ DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQADQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHIFL (Putrescine aminotransferase OS=Shigella flexneri GN=patA PE=3 SV=5) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SHIF8 (Putrescine aminotransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=patA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SALTI (Putrescine aminotransferase OS=Salmonella typhi GN=patA PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN++ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHEARGKGMLMAIEFVDNET 400
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_SALHS (Putrescine aminotransferase OS=Salmonella heidelberg (strain SL476) GN=patA PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/128 (32.03%), Postives = 69/128 (53.91%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNKS 382 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN++ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDTLLDGFRQLAREYPNLVHEARGKGMLMAIEFVDNET 400
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ESCF3 (Putrescine aminotransferase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=patA PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOUT (Putrescine aminotransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=patA PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOSM (Putrescine aminotransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=patA PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399
BLAST of CX287325 vs. ExPASy Swiss-Prot
Match: PAT_ECOSE (Putrescine aminotransferase OS=Escherichia coli (strain SE11) GN=patA PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 5.927e-16 Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 2 Query: 5 GRLGTMFGCDKYSIKPDLVSFAKALSSAYMPIGAILVSPEVSEVIHSQSNTLGSFSHGFTYSGHPVSCAVAIEALKIYKERNIVEQVNKIAPKFQDGVKAFSDS--PIIGEIRGTGLILGTEFADNK 379 GR G MF C+ +++PD++ AKAL MPIGA + + EV V+ F H T+ G+P++CA A+ + + E+N+ Q + DG + + ++ E RG G+++ EF DN+ Sbjct: 278 GRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFD-----NPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE 399 The following BLAST results are available for this feature:
BLAST of CX287325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 145
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287325 ID=CX287325; Name=CX287325; organism=Citrus clementina; type=EST; length=414bpback to top |