CX287350

Overview
NameCX287350
Unique NameCX287350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C76_ARATH (Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.581e-38
Identity = 74/110 (67.27%), Postives = 93/110 (84.55%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ER+RIE AGG +MWAGTWRVGGVLA+SRAFG+R+LKQ+VVA+PEIQ+  ID   E L+LASDGLWDVV NE+AVA+ +  ++PE AA++L   A+ RGSADNITC+VV+F
Sbjct:  238 ERKRIESAGGVIMWAGTWRVGGVLAMSRAFGNRMLKQFVVAEPEIQDLEIDHEAELLVLASDGLWDVVPNEDAVALAQSEEEPEAAARKLTDTAFSRGSADNITCIVVKF 347          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C56_ORYSJ (Probable protein phosphatase 2C 56 OS=Oryza sativa subsp. japonica GN=Os06g0526800/Os06g0526950 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.889e-32
Identity = 64/112 (57.14%), Postives = 91/112 (81.25%), Query Frame = 1
Query:   19 RGERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            + E++RIEDAGG V++  TWRV G+LA+SRAFG+R LK YV A+P+IQE+V+D SLE+LILA+DGLWDV+ NE+AV+++K    P+ AA +L + A+ R + DNITC+V++F
Sbjct:  232 KDEQKRIEDAGGIVVFDDTWRVNGLLAMSRAFGNRALKHYVKAEPDIQEKVVDESLEYLILATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVAHSRLTLDNITCIVLQF 343          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C55_ORYSJ (Probable protein phosphatase 2C 55 OS=Oryza sativa subsp. japonica GN=Os06g0526700 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.194e-31
Identity = 64/116 (55.17%), Postives = 90/116 (77.59%), Query Frame = 1
Query:    7 PNSARGERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            PN  + ER+RIEDAGG V+    WRV G+LAVSRAFG+RL+K+YV A+P IQE+V+D  LE+L+LA+DGLWDV+ NE+AV+++K    P+ AA +L + A  R + DN+TC+V++F
Sbjct:  255 PNK-KDERKRIEDAGGIVVSDDIWRVDGILAVSRAFGNRLMKRYVKAEPNIQEKVVDEGLEYLVLATDGLWDVMRNEDAVSLLKAQDGPKAAAMKLTEVARSRLTLDNVTCIVLQF 369          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.814e-26
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMW--AGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ERQRIE  GGFV        RV G LAV+RAFGD+ LK ++ ++P+++   I+SS+EF+ILASDGLW V+ N+EAV ++K I+DP+ AAKRL  EA  R S D+I+C+V+RF
Sbjct:  208 ERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVKSIKDPQAAAKRLTTEALARKSKDDISCIVIRF 319          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.892e-26
Identity = 60/114 (52.63%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   19 RGERQRIEDAGGFV--MWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            R ER  IED GGFV  +     RV G LAVSRAFGD+ LK ++ ++P+I+E  +DS  + L+LASDG+W V+TNEEA+ + + ++DP++AAK L  EA +R S D+I+CVVVRF
Sbjct:  167 RTERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGDKGLKTHLSSEPDIKEATVDSQTDVLLLASDGIWKVMTNEEAMEIARRVKDPQKAAKELTAEALRRESKDDISCVVVRF 280          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 9.952e-25
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 1
Query:    4 VPNSARGERQRIEDAGGFV--MWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL 357
            V +    ER  IE  GGFV  +     RV G LAV+RAFGDR LK+++ ++P++ EE ID + +FLILASDGLW V++N+EAV  IK  +D + AAK L ++A  R S D+I+C+VV+FL
Sbjct:  170 VDHEPNKERHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQAAAKHLTEQAVNRKSKDDISCIVVKFL 289          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C32_ORYSJ (Probable protein phosphatase 2C 32 OS=Oryza sativa subsp. japonica GN=Os03g0292100 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.782e-24
Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 1
Query:   13 SARGERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEE------AAKRLMQEAYQRGSADNITCVVVR 351
            S   ER+RIE+ GGFV+ + GTWRV G LAVSR  GD  LKQ+VV+DP+     +DS  EFLILASDGLWD V N+EAV + +P+    +      A +RL++ A  RGS D+I+ V+++
Sbjct:  266 SREDERERIENLGGFVVNYRGTWRVQGSLAVSRGIGDAHLKQWVVSDPDTTTLGVDSQCEFLILASDGLWDKVENQEAVDIARPLYISNDKASRMTACRRLVETAVTRGSTDDISIVIIQ 385          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C17_ARATH (Probable protein phosphatase 2C 17 OS=Arabidopsis thaliana GN=At1g78200 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.782e-24
Identity = 58/112 (51.79%), Postives = 82/112 (73.21%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMW--AGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ER  IE  GGFV        RV G+LAVSR FGD+ LK Y+ ++PEI++  IDS  +FLILASDG+  V++N+EAV + K ++DP+EAA++++ EA +R S D+I+C+VVRF
Sbjct:  171 ERSMIESKGGFVTNRPGDVPRVNGLLAVSRVFGDKNLKAYLNSEPEIKDVTIDSHTDFLILASDGISKVMSNQEAVDVAKKLKDPKEAARQVVAEALKRNSKDDISCIVVRF 282          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 6.450e-24
Identity = 61/112 (54.46%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   25 ERQRIEDAGGFV--MWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRF 354
            ER  IE+ GGFV  M     RV G LAVSRAFGDR LK  + ++P+I+ E ID + E L+LASDGLW V+ N+E V + K  +DP+ AAK+L  EA +R S D+I+CVVVRF
Sbjct:  171 ERSAIENRGGFVSNMPGDVPRVCGQLAVSRAFGDRNLKSLLKSEPDIKVEDIDYTAELLVLASDGLWKVMNNQEVVDVAKRFKDPQAAAKQLTAEALKRDSKDDISCVVVRF 282          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 6.450e-24
Identity = 56/116 (48.28%), Postives = 83/116 (71.55%), Query Frame = 1
Query:   25 ERQRIEDAGGFV--MWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 366
            E++ IE  GGFV  +     RV G LAV+RAFGD+ LK ++ +DP+I++E ID   EF++ ASDG+W V++N+EAV +IK I+DP+ AAK L++EA  + S D+I+C+V  FL  +
Sbjct:  167 EQKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSDPDIRDENIDHETEFILFASDGVWKVMSNQEAVDLIKSIKDPQAAAKELIEEAVSKQSTDDISCIVPCFLRRE 282          
The following BLAST results are available for this feature:
BLAST of CX287350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
P2C76_ARATH1.581e-3867.27Probable protein phosphatase 2C 76 OS=Arabidopsis ... [more]
P2C56_ORYSJ2.889e-3257.14Probable protein phosphatase 2C 56 OS=Oryza sativa... [more]
P2C55_ORYSJ3.194e-3155.17Probable protein phosphatase 2C 55 OS=Oryza sativa... [more]
P2C44_ORYSJ1.814e-2654.46Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C09_ARATH6.892e-2652.63Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
P2C62_ORYSJ9.952e-2550.00Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C32_ORYSJ3.782e-2450.00Probable protein phosphatase 2C 32 OS=Oryza sativa... [more]
P2C17_ARATH3.782e-2451.79Probable protein phosphatase 2C 17 OS=Arabidopsis ... [more]
P2C41_ORYSJ6.450e-2454.46Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C20_ARATH6.450e-2448.28Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC01008F01SK Veg1 Citrus clementina cDNA clone C01008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287350 ID=CX287350; Name=CX287350; organism=Citrus clementina; type=EST; length=529bp
CTCGTGCCGAATTCGGCACGAGGTGAGCGTCAACGGATTGAGGATGCAGG
AGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGAGTTCTTGCCG
TTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTGCTGAT
CCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTTATCCT
TGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGTTGCGA
TGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGATGCAG
GAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTTGTTCG
GTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATGAACAT
CCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCCTTTCA
GTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTACTTTG
TAATGATAGAACATGAACAAAAAGCTTAC
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