CX287350

Overview
NameCX287350
Unique NameCX287350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PP2C1_YEAST (Protein phosphatase 2C homolog 1 OS=Saccharomyces cerevisiae GN=PTC1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVV 348
            E QR+E AGG +M +   RV G+LAV+R+ GD+     VV  P      I S  +FLILA DGLWDV+ +++A  +IK I +P EAAK L++ A + G+ DN+T +VV
Sbjct:  175 EMQRVEQAGGLIMKS---RVNGMLAVTRSLGDKFFDSLVVGSPFTTSVEITSEDKFLILACDGLWDVIDDQDACELIKDITEPNEAAKVLVRYALENGTTDNVTVMVV 279          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C02_ARATH (Probable protein phosphatase 2C 2 OS=Arabidopsis thaliana GN=At1g07160 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.147e-19
Identity = 52/117 (44.44%), Postives = 76/117 (64.96%), Query Frame = 1
Query:   25 ERQRIEDAGGFV-MWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI-------QDPEEAAKRLMQEAYQRGSADNITCVVVR 351
            ER RIE +GG+V  +   WR+ G LAVSR  GD  LKQ+++++PEI    I+   EFLILASDGLWD V+N+EAV + +P        + P  A K+L+  +  RGS D+I+ ++++
Sbjct:  259 ERNRIESSGGYVDTFNSVWRIQGSLAVSRGIGDAHLKQWIISEPEINILRINPQHEFLILASDGLWDKVSNQEAVDIARPFCKGTDQKRKPLLACKKLVDLSVSRGSLDDISVMLIQ 375          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C28_ARATH (Probable protein phosphatase 2C 28 OS=Arabidopsis thaliana GN=At2g34740 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.784e-19
Identity = 54/113 (47.79%), Postives = 71/113 (62.83%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMW--AGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL 357
            ER  ++  GGFV        RV G LA++RAFGD  LK+++   P I+   I    +FLILASDGLW V++N+E    IK   + EEAAK L+ +A  RGS D+I+CVVV FL
Sbjct:  123 ERDLVKSKGGFVSQKPGNVPRVDGQLAMTRAFGDGGLKEHISVIPNIEIAEIHDDTKFLILASDGLWKVMSNDEVWDQIKKRGNAEEAAKMLIDKALARGSKDDISCVVVSFL 235          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C74_ORYSJ (Probable protein phosphatase 2C 74 OS=Oryza sativa subsp. japonica GN=Os11g0242200 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 53/117 (45.30%), Postives = 77/117 (65.81%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWA--GTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVI-DSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVV---RFL 357
            ER RIE +GG+V     G WRV   LAV+R+FGD  LK++VVA+PE+    +  +  EFL++ASDGLW+ V+N+EAV  +       ++ +RL+  A +RGS D++T +VV   RFL
Sbjct:  279 ERSRIESSGGYVSCGSNGVWRVQDCLAVTRSFGDGGLKRWVVAEPEVSRTPLAGAGCEFLVIASDGLWNKVSNQEAVDAVAAGHYSVDSCRRLVDMARRRGSRDDVTVMVVDLKRFL 395          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PP2C1_SCHPO (Protein phosphatase 2C homolog 1 OS=Schizosaccharomyces pombe GN=ptc1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.818e-18
Identity = 54/120 (45.00%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   13 SARGERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVI-DSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQG 369
            S   E +R+   GG ++     R+ GVLAV+RA GD  LK+ V A P   E  I +   EF I+A DGLWDVV+++EAV  ++    P EAA RL++ A +R S DNITC+VV    N G
Sbjct:  212 SDANESRRVTQLGGLMVQN---RINGVLAVTRALGDTYLKELVSAHPFTTETRIWNGHDEFFIIACDGLWDVVSDQEAVDFVRNFVSPREAAVRLVEFALKRLSTDNITCIVVNLTRNPG 328          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI-----KPIQDPEEAAKRLMQEAYQRGSADNITCVVV 348
            E+QRIE  GG V+W G WRV G L+VSRA GD   K Y+  D +    V+D + ++LILA DG +D V  +EAV ++     +   D    A +L+  A   GS+DNIT +VV
Sbjct:  371 EKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVV 483          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 49/113 (43.36%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI-----KPIQDPEEAAKRLMQEAYQRGSADNITCVVV 348
            E+QRIE  GG V+W G WRV G L+VSRA GD   K Y+  D +    V+D + ++LILA DG +D V  +EAV ++     +   D    A +L+  A   GS+DNIT +VV
Sbjct:  371 EKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVV 483          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.908e-18
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = 1
Query:   25 ERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI-----KPIQDPEEAAKRLMQEAYQRGSADNITCVVV 348
            E+QRIE  GG ++W G WRV G L+VSRA GD   K Y+  D +    V+D + ++LILA DG +D V  +EAV ++     +   D    A +L+  A   GS+DNIT +VV
Sbjct:  385 EKQRIEALGGCIVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVVSDHLKENNGDSSMVAHKLVASARDAGSSDNITVIVV 497          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C14_ARATH (Probable protein phosphatase 2C 14 OS=Arabidopsis thaliana GN=At1g67820 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.022e-18
Identity = 46/99 (46.46%), Postives = 66/99 (66.67%), Query Frame = 1
Query:   25 ERQRIEDAGGFV-MWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRG 318
            E++RIE  GG+V    G WRV G+LAVSR+ GD  LK++VVA+PE +   ++  +EFL+LASDGLWDVV+N+EAV  +  +    +  K   +E   +G
Sbjct:  256 EKERIESQGGYVDNHQGAWRVQGILAVSRSIGDAHLKKWVVAEPETRVLELEQDMEFLVLASDGLWDVVSNQEAVYTVLHVLAQRKTPKESEEENLVQG 354          
BLAST of CX287350 vs. ExPASy Swiss-Prot
Match: P2C50_ORYSJ (Probable protein phosphatase 2C 50 OS=Oryza sativa subsp. japonica GN=Os05g0537400 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.303e-16
Identity = 55/133 (41.35%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 RGERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK--------------PIQDPEE---------AAKRLMQEAYQRGSADNITCVVV 348
            + ER RIE  GG V+    +RV G+LA+SR+ GDR LK +V+  PE+         + LILASDGLWDVV+NEEA  + +              P+ D  E         AA  LM+ A ++GS DNIT +VV
Sbjct:  243 KDERARIEAQGGKVIQWNGYRVSGILAMSRSIGDRYLKPFVIPKPEVMVVPRAKDDDCLILASDGLWDVVSNEEACKVARRQILLWHKNNGAASPLSDEGEGSTDPAAQAAADYLMRLALKKGSEDNITVIVV 375          
The following BLAST results are available for this feature:
BLAST of CX287350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
PP2C1_YEAST2.147e-1946.30Protein phosphatase 2C homolog 1 OS=Saccharomyces ... [more]
P2C02_ARATH2.147e-1944.44Probable protein phosphatase 2C 2 OS=Arabidopsis t... [more]
P2C28_ARATH4.784e-1947.79Probable protein phosphatase 2C 28 OS=Arabidopsis ... [more]
P2C74_ORYSJ8.160e-1945.30Probable protein phosphatase 2C 74 OS=Oryza sativa... [more]
PP2C1_SCHPO1.818e-1845.00Protein phosphatase 2C homolog 1 OS=Schizosaccharo... [more]
PPM1E_RAT5.289e-1843.36Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_MOUSE5.289e-1843.36Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
PPM1E_HUMAN6.908e-1842.48Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C14_ARATH9.022e-1846.46Probable protein phosphatase 2C 14 OS=Arabidopsis ... [more]
P2C50_ORYSJ1.303e-1641.35Probable protein phosphatase 2C 50 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC01008F01SK Veg1 Citrus clementina cDNA clone C01008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287350 ID=CX287350; Name=CX287350; organism=Citrus clementina; type=EST; length=529bp
CTCGTGCCGAATTCGGCACGAGGTGAGCGTCAACGGATTGAGGATGCAGG
AGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGAGTTCTTGCCG
TTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGTTGTTGCTGAT
CCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGTTTCTTATCCT
TGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAAGCTGTTGCGA
TGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAGGCTGATGCAG
GAGGCATATCAGAGAGGCAGCGCAGACAACATCACCTGTGTCGTTGTTCG
GTTCTTGGCCAATCAAGGTGGTTCATCCTTTCCTGGCTCTGCATGAACAT
CCTTTCATAGCCACCGCTCTGCTTTTGTTCTCTACATGGGCATCCTTTCA
GTGGTCTACAGCTAGTAGTCATAGAAAAATTACAGTTTCGTTGTACTTTG
TAATGATAGAACATGAACAAAAAGCTTAC
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