CX287366

Overview
NameCX287366
Unique NameCX287366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.870e-29
Identity = 65/134 (48.51%), Postives = 88/134 (65.67%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQ--DPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            S F  R+  AL  K +++EY +ED+ NKS  LL++NP+HKK+PVL+H+ K I ES++ +EYI+E W      LLP DPY+RA ARFWA + D+KL     K   TKGEE+E A K   E L+ +EG L  + YF
Sbjct:   14 SMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKKLYDFGRKLWATKGEEQEAAKKDFIECLKVLEGALGDRPYF 147          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.536e-24
Identity = 61/144 (42.36%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWP-----QDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKE---VLEKIEGEL----KGKSYF 398
            SP+  RV   L LK + +EY+EE++ +KS  LL  NPVHK VPVL+H  + + ES VI++YIDE WP     +  ++P DPYERA+ARFWA + D+K ++ AW +     + +E+   A  +    LE +EG      KGK +F
Sbjct:   15 SPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDK-VRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFF 157          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.698e-23
Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDP-LLP-------QDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            SPF  R   A+  KG+EFEY EED+ NKS  LL  NPVH+K+PVL+H  + + ESLVIL+Y+D+ +P  P LLP          Y RA ARFWA + D KL     +    KGE +  A +   E+L  +E EL  + +F
Sbjct:   15 SPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFF 154          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.941e-23
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLL--------PQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            SPF  R   A+  KG+EFEY EED+ NKS  LL  NPVH+K+PVL+H  + + ESLVIL+Y+D+ +P  P L            Y RA ARFWA + D KL     +    KGE +  A +   E+L  +E EL  + +F
Sbjct:   15 SPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKGEPQAAAGREMAEILRTLEAELGDREFF 154          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.978e-16
Identity = 53/146 (36.30%), Postives = 77/146 (52.74%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIF-NKSTRLLELNPVHKKVPVLV-HDDKVIVESLVILEYIDETWPQDP-------LLPQDPYERAMARFWAKFADEKLMQ-----TAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            SPF  R   AL L+GV +E ++E +   KS RLL  NPV+ K+PVL+  D + I ES VI++YI++   +         LLP DPYERAM RFW  F D+K        +   +   + +  ED   A   + E  +    G+++F
Sbjct:    9 SPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFF 154          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: MAAI_CAEEL (Probable maleylacetoacetate isomerase OS=Caenorhabditis elegans GN=gst-42 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 3
Query:   15 FRVVWALKLKGVEFEYIEEDIFNKS--TRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAMAR 251
            +RV  AL LK V++EY   D+ ++   ++L E+NP   KVP  V D +VI ESL I+EY++ET P  PLLP+DP +RA AR
Sbjct:   18 WRVRIALALKNVDYEYKTVDLLSEEAKSKLKEINPA-AKVPTFVVDGQVITESLAIIEYLEETHPDVPLLPKDPIKRAHAR 97          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTZ1_DIACA (Glutathione S-transferase 1 OS=Dianthus caryophyllus GN=GST1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIF---NKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAM 245
            S   +RV  AL LKG++FEY   D+F   + +   L+LNP+   VPVLVH D VI +SL I+ Y++E +P++PLLPQD  +RA+
Sbjct:   17 SSCAWRVRIALHLKGLDFEYKAVDLFKGEHLTPEFLKLNPLGY-VPVLVHGDIVIADSLAIIMYLEEKFPENPLLPQDLQKRAL 99          
The following BLAST results are available for this feature:
BLAST of CX287366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GSTXC_TOBAC7.870e-2948.51Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTU6_ORYSJ1.536e-2442.36Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTU1_ORYSJ1.698e-2344.29Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI4.941e-2342.86Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTX2_MAIZE9.978e-1636.30Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
MAAI_CAEEL1.349e-1249.38Probable maleylacetoacetate isomerase OS=Caenorhab... [more]
GSTZ1_DIACA3.924e-1247.62Glutathione S-transferase 1 OS=Dianthus caryophyll... [more]

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Properties
Property NameValue
Genbank descriptionC01008G07SK Veg1 Citrus clementina cDNA clone C01008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287366 ID=CX287366; Name=CX287366; organism=Citrus clementina; type=EST; length=399bp
GTAGTCCTTTTGTGTTTAGGGTAGTATGGGCATTGAAGCTAAAGGGTGTT
GAATTTGAATACATTGAAGAAGACATCTTTAACAAAAGCACCAGGCTTCT
TGAGCTGAACCCAGTTCATAAAAAGGTTCCTGTGCTTGTTCATGATGACA
AAGTGATAGTTGAGTCGCTTGTTATTCTGGAGTACATCGATGAGACATGG
CCACAAGATCCGTTGCTGCCTCAAGATCCTTATGAAAGAGCCATGGCTCG
ATTTTGGGCTAAATTTGCAGATGAAAAGCTGATGCAAACTGCATGGAAGT
CAACGTGGACCAAAGGAGAGGAAAAAGAGGATGCTCTGAAAGCAACAAAG
GAAGTTTTGGAGAAGATAGAGGGAGAACTCAAAGGAAAAAGCTACTTTG
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