CX287367

Overview
NameCX287367
Unique NameCX287367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.054e-31
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            L+ G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:  101 LEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.601e-31
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.601e-31
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.601e-31
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:  101 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.601e-31
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.601e-31
Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G
Sbjct:  101 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            ++G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            ++G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            L+ G+VYREH+RS GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:  101 LEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            ++G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of CX287367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS1_BRANA5.054e-3175.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_FLAPR6.601e-3174.03Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR6.601e-3174.03Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_FLAPR6.601e-3174.03Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_FLAPR6.601e-3174.03Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR6.601e-3174.03Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS6_LEMGI8.621e-3178.38Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI8.621e-3178.38Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_SOYBN8.621e-3176.32Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS4_LEMGI8.621e-3178.38Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionC01008G08SK Veg1 Citrus clementina cDNA clone C01008G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287367 ID=CX287367; Name=CX287367; organism=Citrus clementina; type=EST; length=404bp
TCGGCACGAGGAGTCTCGAGTTTTTTTTTTTTTTTTTTGGTTTTTCTATT
GGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGT
CAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGT
TCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTA
TGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTT
TAAT
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