CX287367
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31 Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286 ++G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31 Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286 ++G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 8.621e-31 Identity = 57/77 (74.03%), Postives = 69/77 (89.61%), Query Frame = 2 Query: 62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G Sbjct: 96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.126e-30 Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 2 Query: 62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 L+ +VYRE+HRSPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP G Sbjct: 105 LEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.471e-30 Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 + G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG Sbjct: 104 EHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.471e-30 Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 + G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISFIA KPPG Sbjct: 104 EHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 1.921e-30 Identity = 54/72 (75.00%), Postives = 67/72 (93.06%), Query Frame = 2 Query: 71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286 G+VYRE+HRSPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISFIA KP Sbjct: 108 GFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 1.921e-30 Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 + G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 130.954 bits (328), Expect = 1.921e-30 Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 ++G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 105 ERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 2.508e-30 Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2 Query: 65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292 + G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179 The following BLAST results are available for this feature:
BLAST of CX287367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287367 ID=CX287367; Name=CX287367; organism=Citrus clementina; type=EST; length=404bpback to top |