CX287367

Overview
NameCX287367
Unique NameCX287367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.508e-30
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            + G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.508e-30
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            + G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.508e-30
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            + G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.508e-30
Identity = 56/75 (74.67%), Postives = 68/75 (90.67%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.508e-30
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            + G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  105 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.508e-30
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            + G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.276e-30
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:  101 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.279e-30
Identity = 55/77 (71.43%), Postives = 68/77 (88.31%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SFIA+KP G
Sbjct:   96 LEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.279e-30
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            L+  +VYRE++RSPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:  105 LEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.588e-30
Identity = 57/77 (74.03%), Postives = 64/77 (83.12%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L+ G VYREH R PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISF+A KPPG
Sbjct:  105 LEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
The following BLAST results are available for this feature:
BLAST of CX287367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBSC_SOLTU2.508e-3075.00Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU2.508e-3075.00Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU2.508e-3075.00Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS6_FLAPR2.508e-3074.67Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS2_NICSY2.508e-3075.00Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS1_NICSY2.508e-3075.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HELAN3.276e-3071.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR4.279e-3071.43Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR4.279e-3076.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES5.588e-3074.03Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionC01008G08SK Veg1 Citrus clementina cDNA clone C01008G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287367 ID=CX287367; Name=CX287367; organism=Citrus clementina; type=EST; length=404bp
TCGGCACGAGGAGTCTCGAGTTTTTTTTTTTTTTTTTTGGTTTTTCTATT
GGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGT
CAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGT
TCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTA
TGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTT
TAAT
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