CX287367

Overview
NameCX287367
Unique NameCX287367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.798e-28
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 2
Query:   50 WVA*LQ---KGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            WV  L+   +G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.348e-28
Identity = 53/75 (70.67%), Postives = 66/75 (88.00%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            L+KG+V+R+++ SPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISFIA+ P
Sbjct:  101 LEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.348e-28
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:  107 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.348e-28
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:  106 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.066e-28
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:  110 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.066e-28
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:  106 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.066e-28
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:  107 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.005e-28
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            G+++REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SFIA+KPPG
Sbjct:   95 GFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.005e-28
Identity = 53/82 (64.63%), Postives = 68/82 (82.93%), Query Frame = 2
Query:   50 WVA*LQ---KGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            WV  L+   +G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.230e-28
Identity = 53/72 (73.61%), Postives = 61/72 (84.72%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP
Sbjct:  104 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
The following BLAST results are available for this feature:
BLAST of CX287367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS2_FRIAG1.798e-2865.85Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_TRIRP2.348e-2870.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_MESCR2.348e-2873.61Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_MESCR2.348e-2873.61Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_MESCR3.066e-2872.22Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_MESCR3.066e-2872.22Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_MESCR3.066e-2872.22Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_AEGTA4.005e-2871.62Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG4.005e-2864.63Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS2_MESCR5.230e-2873.61Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC01008G08SK Veg1 Citrus clementina cDNA clone C01008G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287367 ID=CX287367; Name=CX287367; organism=Citrus clementina; type=EST; length=404bp
TCGGCACGAGGAGTCTCGAGTTTTTTTTTTTTTTTTTTGGTTTTTCTATT
GGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGT
CAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGT
TCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTA
TGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTT
TAAT
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