CX287367

Overview
NameCX287367
Unique NameCX287367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.165e-27
Identity = 53/82 (64.63%), Postives = 67/82 (81.71%), Query Frame = 2
Query:   50 WVA*LQ---KGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            WV  L+   +G+V R++++SPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.522e-27
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 2
Query:   77 VYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISFIA KP
Sbjct:  107 VYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.522e-27
Identity = 52/77 (67.53%), Postives = 66/77 (85.71%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            L++G+V+R++   P YYDGRYWTMWKLPM+GCTD+ QVL+E+   +KEYP++F+RIIGFDN RQVQCISFIA KP G
Sbjct:  105 LEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.783e-27
Identity = 52/74 (70.27%), Postives = 60/74 (81.08%), Query Frame = 2
Query:   71 GWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            G+VYRE+  SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q QC+SFIA KPPG
Sbjct:   95 GFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.553e-27
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            ++ G+VYREH +SPGYYDGRYWTMWKLPM+G TD  QV+ EV EV+K  P +FVR IGF++KR+VQCISFIA KP G
Sbjct:   46 VKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.197e-26
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 2
Query:   62 LQKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            L KG+VY EH++SP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQVQCISFIA  P
Sbjct:   59 LLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.870e-26
Identity = 52/82 (63.41%), Postives = 65/82 (79.27%), Query Frame = 2
Query:   50 WVA*LQ---KGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            WV  L+   +G + R+++RSPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQVQCISFI  KP
Sbjct:   89 WVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.860e-25
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 2
Query:   65 QKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            + G + R +  SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQVQCISFI  KP
Sbjct:  113 EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = 2
Query:   50 WVA*LQ---KGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            WV  L+   +G+VYRE+  SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ Q ++FIA KP G
Sbjct:   84 WVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.380e-20
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 2
Query:   68 KGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFIAAKP 286
            +G V RE    PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E +K Y    ++R +GFDN RQVQC SFI  +P
Sbjct:  105 QGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
The following BLAST results are available for this feature:
BLAST of CX287367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS5_FRIAG1.165e-2764.63Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_SILPR1.522e-2777.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI1.522e-2767.53Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE5.783e-2770.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL7.553e-2768.83Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS1_PEA2.197e-2670.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH2.870e-2663.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.860e-2566.22Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY1.630e-2159.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA1.380e-2059.46Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionC01008G08SK Veg1 Citrus clementina cDNA clone C01008G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287367 ID=CX287367; Name=CX287367; organism=Citrus clementina; type=EST; length=404bp
TCGGCACGAGGAGTCTCGAGTTTTTTTTTTTTTTTTTTGGTTTTTCTATT
GGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGT
CAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGT
TCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTA
TGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTT
TAAT
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