CX287367

Overview
NameCX287367
Unique NameCX287367
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length404
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  200 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262          

HSP 2 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  344 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406          

HSP 3 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  631 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693          

HSP 4 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  774 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836          

HSP 5 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct: 1062 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124          

HSP 6 Score: 93.5893 bits (231), Expect = 3.398e-19
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            GYYD  YWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  487 GYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549          

HSP 7 Score: 93.5893 bits (231), Expect = 3.398e-19
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P
Sbjct: 1206 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266          

HSP 8 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  104 GYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 292
            GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR + FD+ +QVQ ISF+  +P G
Sbjct:  919 GYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.438e-19
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 2
Query:   98 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F+  +P
Sbjct:   92 SAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.517e-16
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  107 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:  112 YYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.517e-16
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  107 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 286
            YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:  112 YYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.834e-16
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 2
Query:  107 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:  109 YQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.745e-15
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2
Query:   98 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:  107 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.745e-15
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2
Query:   98 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 2
Query:  107 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:  111 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 2
Query:  107 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CX287367 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.279e-15
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 2
Query:  107 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 289
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:  100 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160          
The following BLAST results are available for this feature:
BLAST of CX287367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS_EUGGR8.942e-2060.32Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS_CHLMO4.438e-1957.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE3.517e-1653.33Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE3.517e-1653.33Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACEAT7.834e-1654.10Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_ACECL1.745e-1551.56Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_ACECL1.745e-1551.56Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS5_ACECL2.279e-1552.46Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACECL2.279e-1552.46Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_ACEAT2.279e-1552.46Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionC01008G08SK Veg1 Citrus clementina cDNA clone C01008G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287367 ID=CX287367; Name=CX287367; organism=Citrus clementina; type=EST; length=404bp
TCGGCACGAGGAGTCTCGAGTTTTTTTTTTTTTTTTTTGGTTTTTCTATT
GGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCA
CCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTA
TGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGA
AGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGT
CAAGTGCAGTGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGT
TCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTA
TGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTT
TAAT
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