CX287378

Overview
NameCX287378
Unique NameCX287378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.384e-25
Identity = 64/100 (64.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQKDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MA + CFLH  AL+++ AR+S   SSQR+VS  K   +VC+AQ+    ++D S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPK NTDF  Y
Sbjct:    1 MAYSACFLHQSALASSTARSSPSSSSQRYVSISK---LVCKAQQ--THEEDNSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKKNTDFTAY 95          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.026e-20
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  109 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQKDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDF 390
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDF 97          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.767e-18
Identity = 53/99 (53.54%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQKDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAY 94          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.062e-17
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 1
Query:  244 KDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDF 390
            +DD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDF 49          
The following BLAST results are available for this feature:
BLAST of CX287378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSBP_SINAL1.384e-2564.00Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS1.026e-2053.85Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT4.767e-1853.54Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU1.062e-1787.76Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01008H07SK Veg1 Citrus clementina cDNA clone C01008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287378 ID=CX287378; Name=CX287378; organism=Citrus clementina; type=EST; length=400bp
GAGTTTTTTTTTTTTTTTTTCCTTATTACTTTTATAATTGTTAGTGAAGC
GTTTAGTGAACGAATAAAAAAAAAAAAAAAAAAAAGGGAAGAGAGCGAAA
AGAAAAAAATGGCTTCAACTCAATGCTTCTTGCACCACCATGCACTCTCT
ACTACACCAGCAAGAACATCATCATCTCAGCGCCACGTGTCGAACATCAA
GCCCACCCAAATTGTCTGCCGTGCGCAAAAGCAAGCTGTCCAAAAAGATG
ACGGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCT
GCTGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATC
TGCCAATGTGTTTGGTAAGCCAAAGACCAACACTGACTTCTTGCCATACA
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