CX287404

Overview
NameCX287404
Unique NameCX287404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length484
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_XENLA (Proliferating cell nuclear antigen OS=Xenopus laevis GN=pcna PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.306e-39
Identity = 75/117 (64.10%), Postives = 98/117 (83.76%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 369
            EFARIC+DL+ IGD VVIS  K+GVKFS  G++GT N+ L Q + VDK EEA  IEM+EPV LTFALRY+N FT+ATPLS TV +S+S+++P+VVEYKIA+M ++++YLAPKIE++E
Sbjct:  143 EFARICRDLSQIGDAVVISCAKDGVKFSASGELGTGNVKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSPTVILSMSADIPLVVEYKIADMEHVKYYLAPKIEDEE 259          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_HAPBU (Proliferating cell nuclear antigen OS=Haplochromis burtoni GN=pcna PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 9.618e-39
Identity = 74/116 (63.79%), Postives = 97/116 (83.62%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 366
            EFARIC+DL+ IGD V+IS  K+GVKFS  G++GT NI L Q + VDK +EA  IEM+EPV L FAL Y+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG+I++YLAPKI+E+
Sbjct:  143 EFARICRDLSQIGDAVMISCAKDGVKFSASGELGTGNIKLSQTSNVDKEDEAVTIEMNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHIKYYLAPKIDEE 258          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_DANRE (Proliferating cell nuclear antigen OS=Danio rerio GN=pcna PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.256e-38
Identity = 73/116 (62.93%), Postives = 97/116 (83.62%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 366
            EFARIC+DL+ IGD V+IS  K+GVKFS  G++GT NI L Q + VDK +EA  IEM+EPV L FAL Y+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKI+E+
Sbjct:  143 EFARICRDLSQIGDAVMISCAKDGVKFSASGELGTGNIKLSQTSNVDKEDEAVTIEMNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHVKYYLAPKIDEE 258          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_DROME (Proliferating cell nuclear antigen OS=Drosophila melanogaster GN=mus209 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 3.655e-38
Identity = 75/117 (64.10%), Postives = 96/117 (82.05%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 369
            EFARIC+DLA   ++VVI  TKEGVKFS  GD+GTANI L Q  +VDK EEA IIEM EPV+LTFA RY+N+FT+ATPLS  V +S+ +++P+VVEY I ++G+IR+YLAPKIE++E
Sbjct:  143 EFARICRDLAQFSESVVICCTKEGVKFSASGDVGTANIKLAQTGSVDKEEEAVIIEMQEPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYYLAPKIEDNE 259          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_SARCR (Proliferating cell nuclear antigen OS=Sarcophaga crassipalpis GN=PCNA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 6.234e-38
Identity = 73/117 (62.39%), Postives = 97/117 (82.91%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 369
            EFARIC+DLA   ++++I  TKEGVKFS  GD+G+AN+ L Q ++VDK EEA IIEM EPV+LTFA RY+N+FT+ATPLS  V +S+ +++P+VVEY I E+G+IR+YLAPKIE+DE
Sbjct:  143 EFARICRDLAQFSESMLICCTKEGVKFSASGDVGSANVKLAQTSSVDKEEEAVIIEMQEPVTLTFACRYLNAFTKATPLSAQVQLSMCADVPLVVEYAIKELGHIRYYLAPKIEDDE 259          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_BOMMO (Proliferating cell nuclear antigen OS=Bombyx mori GN=PCNA PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.369e-37
Identity = 71/118 (60.17%), Postives = 99/118 (83.90%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE 369
            +EFARIC+DL+  G+++VIS TKEGVKFS  GDIG+AN+ L Q  ++DK EEA +IEM EPV+LTFA +Y+N FT+AT LS  V +S+S+++P+VVEY+I ++G+IR+YLAPKIEE++
Sbjct:  142 SEFARICRDLSQFGESMVISCTKEGVKFSATGDIGSANVKLAQTASIDKEEEAVVIEMEEPVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEED 259          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_ANGJA (Proliferating cell nuclear antigen OS=Anguilla japonica GN=pcna PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 5.278e-37
Identity = 69/116 (59.48%), Postives = 96/116 (82.76%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 366
            EFARIC+DL+ IGD V+IS  K+GV FS  G++GT N+ L Q + VD+ ++A  IEM+EPV L FAL Y+N FT+ATPLS TVT+S+S+++P+VVEYKIA+MG++++YLAPKI+E+
Sbjct:  143 EFARICRDLSQIGDAVMISCAKDGVMFSASGELGTGNVKLSQTSNVDEEDDAVTIEMNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHVKYYLAPKIDEE 258          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_STYCL (Proliferating cell nuclear antigen OS=Styela clava GN=PCNA PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 7.133e-34
Identity = 65/120 (54.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:   19 EFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVD-KPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 375
            EF RIC+DL+ IG+ VVI+ TK+GV+FS +GD+G   I L+QNT  D K EE   +E+ EPV LTFA++Y+N F +A+PLS +V +S+S+ +P+VVEYK+A+MG+I+++LAPKIE++E++
Sbjct:  143 EFGRICRDLSQIGECVVITCTKDGVQFSAKGDLGAGKIKLKQNTGSDIKEEEQVTVEISEPVQLTFAIKYLNLFAKASPLSPSVCLSMSNNVPLVVEYKVADMGHIKYFLAPKIEDEEEQ 262          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_DICDI (Proliferating cell nuclear antigen OS=Dictyostelium discoideum GN=pcna PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.640e-31
Identity = 65/116 (56.03%), Postives = 88/116 (75.86%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKP-EEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIE 360
            AE  RIC+DL+ IG+ V IS  KEGVKFS  GD G+ NI ++  +  D P E+AT+IE  EPV L FAL+++++FT+ATPLS  VT+S+S  +PVVVEYKI ++G++ F+LAPKIE
Sbjct:  143 AELQRICRDLSIIGEIVTISANKEGVKFSVSGDSGSGNITIKPTSDSDVPAEQATVIESKEPVVLNFALKFLSNFTKATPLSPMVTLSMSEGIPVVVEYKIDDLGFLGFFLAPKIE 258          
BLAST of CX287404 vs. ExPASy Swiss-Prot
Match: PCNA_SCHPO (Proliferating cell nuclear antigen OS=Schizosaccharomyces pombe GN=pcn1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.625e-28
Identity = 57/120 (47.50%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   16 AEFARICKDLASIGDTVVISVTKEGVKFSTRGDIGTANIVLRQNTTVDKPEEATIIEMHEPVSLTFALRYMNSFTRATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEDE 375
            AEF RI +DL ++ D+V I+ +KEGV+FS +GDIG  +  L+Q+T +   +++  I + + V+LTF+L+Y+  FT+ATPL+  VT+S+S+++P++VEYK+ E G++RFYLAPKI E+++E
Sbjct:  142 AEFQRITRDLLTLSDSVTINASKEGVRFSCKGDIGNGSTTLKQHTDLSDQDQSIEISLTQAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLVEYKM-ESGFLRFYLAPKIGEEDEE 260          
The following BLAST results are available for this feature:
BLAST of CX287404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PCNA_XENLA3.306e-3964.10Proliferating cell nuclear antigen OS=Xenopus laev... [more]
PCNA_HAPBU9.618e-3963.79Proliferating cell nuclear antigen OS=Haplochromis... [more]
PCNA_DANRE1.256e-3862.93Proliferating cell nuclear antigen OS=Danio rerio ... [more]
PCNA_DROME3.655e-3864.10Proliferating cell nuclear antigen OS=Drosophila m... [more]
PCNA_SARCR6.234e-3862.39Proliferating cell nuclear antigen OS=Sarcophaga c... [more]
PCNA_BOMMO2.369e-3760.17Proliferating cell nuclear antigen OS=Bombyx mori ... [more]
PCNA_ANGJA5.278e-3759.48Proliferating cell nuclear antigen OS=Anguilla jap... [more]
PCNA_STYCL7.133e-3454.17Proliferating cell nuclear antigen OS=Styela clava... [more]
PCNA_DICDI9.640e-3156.03Proliferating cell nuclear antigen OS=Dictyosteliu... [more]
PCNA_SCHPO2.625e-2847.50Proliferating cell nuclear antigen OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionC01009B09SK Veg1 Citrus clementina cDNA clone C01009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287404 ID=CX287404; Name=CX287404; organism=Citrus clementina; type=EST; length=484bp
GAATTGGCACGAGGAGCTGAGTTTGCTAGAATTTGTAAAGATCTTGCCAG
CATTGGTGACACAGTCGTGATTTCTGTCACAAAGGAGGGTGTGAAGTTCT
CTACCAGAGGTGATATTGGAACTGCTAATATTGTGCTCAGGCAAAATACT
ACAGTAGACAAGCCAGAAGAAGCAACAATAATTGAAATGCATGAGCCAGT
GTCATTGACTTTTGCTCTGAGATACATGAATTCATTCACAAGGGCTACTC
CACTGTCGAATACTGTTACTATCAGCCTATCCTCAGAATTGCCAGTTGTG
GTCGAATACAAGATTGCTGAGATGGGTTATATTAGATTCTACTTGGCACC
CAAGATAGAAGAAGATGAGGATGAGACCAAGCCTCAAGTTTAAGTGTCAT
TTGGCACGTAGGCTATGGCATTTTGTTGAATCAAGTTACTCCTATATTTT
AAGTTTGCTTTTAGAATGTTTCTCGTAAATCTTC
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