CX287432

Overview
NameCX287432
Unique NameCX287432
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_HORVU (ATP synthase subunit alpha, chloroplastic OS=Hordeum vulgare GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_AGRST (ATP synthase subunit alpha, chloroplastic OS=Agrostis stolonifera GN=atpA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 2.411e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAE ADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAEMADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNSLLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_SILLA (ATP synthase subunit alpha, chloroplastic OS=Silene latifolia GN=atpA PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 3.148e-78
Identity = 149/153 (97.39%), Postives = 150/153 (98.04%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKSSSFLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_RANMC (ATP synthase subunit alpha, chloroplastic OS=Ranunculus macranthus GN=atpA PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 3.148e-78
Identity = 147/152 (96.71%), Postives = 151/152 (99.34%), Query Frame = 3
Query:    6 MDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            M+YTIVVAETAD+PATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  219 MEYTIVVAETADAPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_NYMAL (ATP synthase subunit alpha, chloroplastic OS=Nymphaea alba GN=atpA PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 3.148e-78
Identity = 148/153 (96.73%), Postives = 151/153 (98.69%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYR+RHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK  S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRQRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKPSSRLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CYCTA (ATP synthase subunit alpha, chloroplastic OS=Cycas taitungensis GN=atpA PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 3.148e-78
Identity = 147/153 (96.08%), Postives = 152/153 (99.35%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMY+E+HTLIIYDDLSKQA+AYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYKEQHTLIIYDDLSKQARAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CUSRE (ATP synthase subunit alpha, plastid OS=Cuscuta reflexa GN=atpA PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 3.148e-78
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMY ERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLS DLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYSERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSKLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSVDLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_CUSEX (ATP synthase subunit alpha, plastid OS=Cuscuta exaltata GN=atpA PE=3 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 3.148e-78
Identity = 148/153 (96.73%), Postives = 151/153 (98.69%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMY ERHTLIIYDDLSKQAQAYRQ+SLLLRRPPGREAYPGDVFYLHSRLLERAAKL S+LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYSERHTLIIYDDLSKQAQAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSKLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_ANTFO (ATP synthase subunit alpha, chloroplastic OS=Anthoceros formosae GN=atpA PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 3.148e-78
Identity = 147/153 (96.08%), Postives = 152/153 (99.35%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            A++YTIVVAETADSPATLQYLAPYTGAALAEYFMYR++HTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL SQLGEGSMTALPIVETQ+GDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA
Sbjct:  218 ALEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRKQHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 370          
BLAST of CX287432 vs. ExPASy Swiss-Prot
Match: ATPA_NICTO (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 4.112e-78
Identity = 148/153 (96.73%), Postives = 150/153 (98.04%), Query Frame = 3
Query:    3 AMDYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLGSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSA 461
            AM+YTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDD SKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKL S LGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSA
Sbjct:  218 AMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSSLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSA 370          
The following BLAST results are available for this feature:
BLAST of CX287432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_HORVU2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Horde... [more]
ATPA_AGRST2.411e-7897.39ATP synthase subunit alpha, chloroplastic OS=Agros... [more]
ATPA_SILLA3.148e-7897.39ATP synthase subunit alpha, chloroplastic OS=Silen... [more]
ATPA_RANMC3.148e-7896.71ATP synthase subunit alpha, chloroplastic OS=Ranun... [more]
ATPA_NYMAL3.148e-7896.73ATP synthase subunit alpha, chloroplastic OS=Nymph... [more]
ATPA_CYCTA3.148e-7896.08ATP synthase subunit alpha, chloroplastic OS=Cycas... [more]
ATPA_CUSRE3.148e-7896.73ATP synthase subunit alpha, plastid OS=Cuscuta ref... [more]
ATPA_CUSEX3.148e-7896.73ATP synthase subunit alpha, plastid OS=Cuscuta exa... [more]
ATPA_ANTFO3.148e-7896.08ATP synthase subunit alpha, chloroplastic OS=Antho... [more]
ATPA_NICTO4.112e-7896.73ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionC01009E04SK Veg1 Citrus clementina cDNA clone C01009E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287432 ID=CX287432; Name=CX287432; organism=Citrus clementina; type=EST; length=463bp
GGGCAATGGACTACACTATTGTGGTAGCCGAAACGGCGGATTCCCCCGCT
ACGTTACAATACCTCGCTCCTTATACGGGCGCAGCTCTAGCTGAATATTT
TATGTACCGTGAACGACACACTTTAATCATTTATGATGATCTCTCCAAAC
AAGCACAGGCTTATCGACAAATGTCTCTTCTATTACGAAGACCACCGGGT
CGCGAAGCTTATCCCGGAGATGTTTTTTATTTGCATTCACGACTTTTGGA
AAGAGCCGCGAAATTAGGTTCGCAGTTAGGCGAAGGAAGTATGACCGCTT
TACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTACT
AATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTATT
CAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGAG
TAGGATCCGCAGC
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