CX287440

Overview
NameCX287440
Unique NameCX287440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC4_RAT (Chloride intracellular channel protein 4 OS=Rattus norvegicus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 53/200 (26.50%), Postives = 94/200 (47.00%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K+    F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAHLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPGEIDENSMEDIKSSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGI 217          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC4_PONAB (Chloride intracellular channel protein 4 OS=Pongo abelii GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.596e-13
Identity = 53/200 (26.50%), Postives = 93/200 (46.50%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVSTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGI 217          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC4_MOUSE (Chloride intracellular channel protein 4 OS=Mus musculus GN=Clic4 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 53/200 (26.50%), Postives = 93/200 (46.50%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G+++T  D +L PKL+ ++V  + ++ + +P+ +  +
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRRFLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGI 217          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC4_BOVIN (Chloride intracellular channel protein 4 OS=Bos taurus GN=CLIC4 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.723e-13
Identity = 53/200 (26.50%), Postives = 93/200 (46.50%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+++   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNNEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGI 217          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC4_HUMAN (Chloride intracellular channel protein 4 OS=Homo sapiens GN=CLIC4 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 3.557e-13
Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHL----------------KTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +E+ VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+ +   D + I   +EE    P         PE  + G  IF  F  ++K+  P  N+  E+ LL+ L+ LDE+L                K     F+ G ++T  D +L PKL+ ++V  + ++ + +P+ +  +
Sbjct:   19 IELFVKAGSDGESI-GNCPFSQRLFMILWLKGVVFSVTTVDLKRKPADLQNLAPGTHPPFITFNSEVKTDVNKIEEFLEEVLCPPKYLKLSPKHPESNTAGMDIFAKFSAYIKNSRPEANEALERGLLKTLQKLDEYLNSPLPDEIDENSMEDIKFSTRKFLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGI 217          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC2_HUMAN (Chloride intracellular channel protein 2 OS=Homo sapiens GN=CLIC2 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.351e-12
Identity = 54/201 (26.87%), Postives = 96/201 (47.76%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +E+ VKA      I G+CPF QR  + L  K V +    ++++ KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL+E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTVDMTRKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEFLEQTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLKEFKRLDDYLNTPLLDEIDPDSAEEPPVSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGV 212          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC2_RAT (Chloride intracellular channel protein 2 OS=Rattus norvegicus GN=Clic2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.932e-12
Identity = 55/201 (27.36%), Postives = 94/201 (46.77%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +E+ VKA      I G+CPF QR  + L  K V +    I+ + KP+   +++P    P + ++ +   D   I   +E+     +YP  S      F  VG  +F  F  ++K+  K+ N   E++LL E K LD++L T                    F+ G+++T  D SL PKL  ++VA + ++ + +P   + V
Sbjct:   14 IELFVKAGSDGESI-GNCPFCQRLFMILWLKGVKFNVTTIDTARKPEELKDLAPGTNPPFLIYNKELKTDFIKIEEFLEKTLAPPRYPHLSPKYKESF-DVGCNLFAKFSAYIKNTQKEANKNFEKSLLREFKRLDDYLNTPLLDEIDPDSTEERTLSRRLFLDGDQLTLADCSLLPKLNIIKVAAKKYRDFDIPAEFSGV 212          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: GSTO1_MOUSE (Glutathione S-transferase omega-1 OS=Mus musculus GN=Gsto1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 53/171 (30.99%), Postives = 83/171 (48.54%), Query Frame = 3
Query:   87 CPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVK-FDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVG--------SKIFPSFVNFLKSKDPND--GTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAH 566
            CPF+QR L+ L+ K + ++   IN+ +KP+WF E +P G VPV++      V +S +    ++E YPE  L     +            SK+ P   +F++SK   D     +AL  E K L+E +  +   F+ G+  + VD    P    L+ ALE      + E LAH
Sbjct:   32 CPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLGLVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSPNLREALENEFKKLEEGMDNYKS-FLGGDSPSMVDYLTWPWFQRLE-ALE------LKECLAH 194          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC5_RAT (Chloride intracellular channel protein 5 OS=Rattus norvegicus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 52/198 (26.26%), Postives = 95/198 (47.98%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESL 560
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAARH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNTPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEM 211          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC5_MOUSE (Chloride intracellular channel protein 5 OS=Mus musculus GN=Clic5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.760e-12
Identity = 52/198 (26.26%), Postives = 95/198 (47.98%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHL----------KTHGG------PFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESL 560
            +E+ VKA +    I G+CPFSQR  + L  K V +    +++  KP     ++P    P + F+     D + I   +E     EKYP+ +  +  E  + G  IF  F  ++K+  +  N   E+ L + L+ LD++L           THG        F+ G+++T  D +L PKL+ +++  + ++ + +P  +
Sbjct:   16 IELFVKAGIDGESI-GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGTHPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKH-RESNTAGIDIFSKFSAYIKNTKQQNNAALERGLTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAEM 211          
The following BLAST results are available for this feature:
BLAST of CX287440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CLIC4_RAT7.166e-1426.50Chloride intracellular channel protein 4 OS=Rattus... [more]
CLIC4_PONAB1.596e-1326.50Chloride intracellular channel protein 4 OS=Pongo ... [more]
CLIC4_MOUSE2.723e-1326.50Chloride intracellular channel protein 4 OS=Mus mu... [more]
CLIC4_BOVIN2.723e-1326.50Chloride intracellular channel protein 4 OS=Bos ta... [more]
CLIC4_HUMAN3.557e-1326.50Chloride intracellular channel protein 4 OS=Homo s... [more]
CLIC2_HUMAN1.351e-1226.87Chloride intracellular channel protein 2 OS=Homo s... [more]
CLIC2_RAT3.932e-1227.36Chloride intracellular channel protein 2 OS=Rattus... [more]
GSTO1_MOUSE6.707e-1230.99Glutathione S-transferase omega-1 OS=Mus musculus ... [more]
CLIC5_RAT8.760e-1226.26Chloride intracellular channel protein 5 OS=Rattus... [more]
CLIC5_MOUSE8.760e-1226.26Chloride intracellular channel protein 5 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC01009E12SK Veg1 Citrus clementina cDNA clone C01009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287440 ID=CX287440; Name=CX287440; organism=Citrus clementina; type=EST; length=577bp
ACTCTCTCTGATCACTCAATTCCGCAAAAATGGCCGTGGAGATTTGTGTG
AAAGCCGCTGTTGGCGCTCCTGATATTCTCGGGGACTGCCCATTTTCCCA
AAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTTCCATACAAGCGTCACC
TCATCAATATCAGTGACAAGCCTCAATGGTTTTTGGAGATAAGCCCAGAA
GGGAAAGTACCTGTGGTAAAGTTTGATGACAAGTGGGTGGCTGACTCTGA
TGTGATTGTTAGAATTATTGAGGAGAAGTATCCTGAGCCTTCTCTTACTA
ATCCTCCTGAATTTGCCTCTGTTGGATCAAAGATATTCCCATCTTTTGTC
AATTTCTTGAAGAGCAAGGACCCAAATGATGGGACAGAGCAAGCTTTGCT
GGAGGAATTGAAAGCATTGGATGAGCATCTTAAGACTCATGGAGGTCCAT
TCATTGCTGGAGAGAAGGTCACTGCTGTAGATTTGAGCTTGGCACCAAAG
CTGTACCACCTTCAGGTAGCTCTTGAACATTTCAAGCAGTGGACTGTCCC
TGAGAGCTTGGCTCATGTCCATGGGTA
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