CX287498

Overview
NameCX287498
Unique NameCX287498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_ELEEL (Calmodulin OS=Electrophorus electricus GN=calm PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_ANAPL (Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.203e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31
Identity = 64/73 (87.67%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD +GFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFVK+M +K
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149          

HSP 2 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DGDG I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARK 76          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM2_BRALA (Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEM+READ+DGDGQ+NYEEFV++M +K
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMVREADIDGDGQVNYEEFVEMMTSK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 2.052e-31
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   84 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 156          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_PYUSP (Calmodulin OS=Pyuridae sp. PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.052e-31
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          

HSP 2 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DGDG I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARK 76          
The following BLAST results are available for this feature:
BLAST of CX287498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
CALM_ELEEL1.203e-3187.67Calmodulin OS=Electrophorus electricus GN=calm PE=... [more]
CALM_DANRE1.203e-3187.67Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3[more]
CALM_CTEID1.203e-3187.67Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2... [more]
CALM_CHICK1.203e-3187.67Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2[more]
CALM_BOVIN1.203e-3187.67Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2[more]
CALM_ANAPL1.203e-3187.67Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2[more]
CALM_RENRE1.571e-3187.67Calmodulin OS=Renilla reniformis PE=1 SV=2[more]
CALM2_BRALA1.571e-3186.30Calmodulin-2 OS=Branchiostoma lanceolatum GN=CAM2 ... [more]
CALM_STRIE2.052e-3187.67Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]
CALM_PYUSP2.052e-3187.67Calmodulin OS=Pyuridae sp. PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01010B12SK Veg1 Citrus clementina cDNA clone C01010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287498 ID=CX287498; Name=CX287498; organism=Citrus clementina; type=EST; length=494bp
ATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTT
CGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGA
TGACAAACCTTGGGGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATA
AGGGAAGCTGATGTCGATGGTGATGGCCAGATAAATTATGAGGAATTTGT
CAAGGTTATGATGGCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGG
AAAAAGAAGAAATTGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTT
TTATAAATTTTAATTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTT
GTCTCCTGCTTCAATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTTA
ATGTTTTAGTTTTTTTCCGCTCTTCTGTGAACATTGTTTCTGTTAAATGA
GTGACTCGTTGATCTGCCTTATTTCTTAAAAAAAAAAAAAAAAA
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