CX287498

Overview
NameCX287498
Unique NameCX287498
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_CAEEL (Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31
Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTTK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_STIJA (Calmodulin OS=Stichopus japonicus PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 4.572e-31
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:    8 MKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 80          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_PAXIN (Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M+DTDSEEE+KEAF+VFDKD NG+ISAAELRHVMTNLGEKLTD EVDEMIREADVDGDGQINY+EFVK+M++K
Sbjct:   77 MRDTDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLTDTEVDEMIREADVDGDGQINYDEFVKMMLSK 149          

HSP 2 Score: 66.6254 bits (161), Expect = 6.864e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  SEE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLSEEQISEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARK 76          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_HALOK (Calmodulin OS=Halichondria okadai PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   77 MKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 149          

HSP 2 Score: 67.3958 bits (163), Expect = 4.024e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  SEE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MTDALSEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALMB_ARBPU (Calmodulin-beta (Fragment) OS=Arbacia punctulata PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   66 MKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTSK 138          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM2_BRAFL (Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=2 SV=4)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAF+VFDKD NGFISAAELRHVMTN GEKLTDEEVDEMIREAD+DGDGQ+NYEEFVK+M +K
Sbjct:   77 MKDTDSEEEIREAFKVFDKDGNGFISAAELRHVMTNPGEKLTDEEVDEMIREADIDGDGQVNYEEFVKMMTSK 149          

HSP 2 Score: 67.0106 bits (162), Expect = 5.256e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  +EE   E KEAF +FDKD NG I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGNGNITTKELGTVMRSLGQNPTEGELQDMINEVDADGNGTIDFPEFLTMMARK 76          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE++EAFRVFDKD +GFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M +K
Sbjct:   77 MKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 149          

HSP 2 Score: 67.781 bits (164), Expect = 3.081e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DGDG I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARK 76          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALM_ACHKL (Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 64/73 (87.67%), Postives = 70/73 (95.89%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MKDTDSEEE+ EAF+ FDKD NGFISAAELRH+MTNLGEKLTDEEVDEMIREAD+DGDGQINYEEFVK+MM+K
Sbjct:   77 MKDTDSEEEILEAFQGFDKDGNGFISAAELRHMMTNLGEKLTDEEVDEMIREADIDGDGQINYEEFVKMMMSK 149          
BLAST of CX287498 vs. ExPASy Swiss-Prot
Match: CALMB_HALRO (Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = 1
Query:    1 MKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 219
            MK+TDSEEE++EAFRVFDKD NGFISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV +M  K
Sbjct:   77 MKETDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTCK 149          
The following BLAST results are available for this feature:
BLAST of CX287498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279
Match NameE-valueIdentityDescription
CALM_CAEEL2.681e-3187.67Calmodulin OS=Caenorhabditis elegans GN=cmd-1 PE=1... [more]
CALM_STIJA4.572e-3186.30Calmodulin OS=Stichopus japonicus PE=1 SV=2[more]
CALM_STRPU5.972e-3186.30Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
CALM_PAXIN5.972e-3186.30Calmodulin OS=Paxillus involutus GN=calA PE=2 SV=3[more]
CALM_HALOK5.972e-3186.30Calmodulin OS=Halichondria okadai PE=2 SV=3[more]
CALMB_ARBPU5.972e-3186.30Calmodulin-beta (Fragment) OS=Arbacia punctulata P... [more]
CALM2_BRAFL5.972e-3186.30Calmodulin-2 OS=Branchiostoma floridae GN=CAM2 PE=... [more]
CALM_PATSP7.799e-3186.30Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_ACHKL7.799e-3187.67Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3[more]
CALMB_HALRO7.799e-3186.30Calmodulin-B OS=Halocynthia roretzi PE=3 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01010B12SK Veg1 Citrus clementina cDNA clone C01010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287498 ID=CX287498; Name=CX287498; organism=Citrus clementina; type=EST; length=494bp
ATGAAGGATACCGACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTT
CGACAAGGATCAGAATGGTTTCATCTCAGCTGCTGAACTGCGTCATGTGA
TGACAAACCTTGGGGAGAAGCTTACTGATGAGGAAGTCGATGAGATGATA
AGGGAAGCTGATGTCGATGGTGATGGCCAGATAAATTATGAGGAATTTGT
CAAGGTTATGATGGCTAAGTAAGTGACTCCACCCAACCAAAACTTCCTGG
AAAAAGAAGAAATTGGTTGATTAATATAATTGGTTCCCTAGTTTCCTTTT
TTATAAATTTTAATTTGATAACTCTGAGGTCAAGCTAAAGGAAGCATGTT
GTCTCCTGCTTCAATTTGTCTTGTGACTGGAGCAACTTTTCAGTTTTTTA
ATGTTTTAGTTTTTTTCCGCTCTTCTGTGAACATTGTTTCTGTTAAATGA
GTGACTCGTTGATCTGCCTTATTTCTTAAAAAAAAAAAAAAAAA
back to top