CX287500

Overview
NameCX287500
Unique NameCX287500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++SRWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  109 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++SRWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G++     ++    P  EV    YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  109 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++ RWAMLG +G + PE+ +K G+      W+ AG         +Y  + +         ++  + +L  +VE  R      P     DPI            YPGG F+PL  A   +A    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   96 ELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVAN 252          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 62/161 (38.51%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E++++RWAMLG +G L PE+  K G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A       E K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   99 ELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 255          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 61/161 (37.89%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++ RWAMLG +G + PE+  + G+      W+ AG A+ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  105 ELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 261          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 62/161 (38.51%), Postives = 85/161 (52.80%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL  GRLAML+  GF VQ  VTGKGP ENL  HI+DP +N
Sbjct:   96 ELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNN 252          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++S WAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   37 ELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 193          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 60/171 (35.09%), Postives = 84/171 (49.12%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++  + IL   VE   ++    P     DPI            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H+++P +N
Sbjct:   76 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNN 232          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 61/171 (35.67%), Postives = 86/171 (50.29%), Query Frame = 2
Query:    5 YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            Y + EL+++RWA+LG +G+L PE+ ++   +    P W+ AG A+ FA     ++    L H   I     ++            N GS        +  L   +  YPGG F+PL  A       E K KE+ NGRLAM + LGF VQ  VTGKGP +NL  H++DP  N
Sbjct:   79 YREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS--------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V      + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   96 ELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVAN 252          
The following BLAST results are available for this feature:
BLAST of CX287500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2A_PYRPY2.268e-1737.27Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY2.268e-1737.27Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB21_GOSHI2.268e-1734.50Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB2_PHYPA2.963e-1738.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_PINSY2.963e-1737.89Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_MAIZE2.963e-1738.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_CUCSA2.963e-1737.89Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_SOYBN2.963e-1735.09Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNTE3.869e-1735.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP3.869e-1736.20Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01010C03SK Veg1 Citrus clementina cDNA clone C01010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287500 ID=CX287500; Name=CX287500; organism=Citrus clementina; type=EST; length=637bp
GTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTG
TTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAAT
GTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATC
GACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAA
GATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTC
AAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTT
CAACCCACTCAACTTTGCACCCACTGATGAGGCAAAGGAGAAGGAGCTTG
CCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCAC
AATGTGACAGGCAAAGGGCCATTTGAAAACCTCCTGCAACATATCTCTGA
CCCATGGCACAACACCATCGTCCAGACACTTAGTGGTAATTAATCAAAGA
TGGATTGGCAATTCGGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTG
TAGTTTTTGAGTGAGATTTGAGCATCAATGTAAACATGGAAACCCTCAAT
GTACAGGGGAACTATGATGGAATTTATATTATCATTT
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