CX287500
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17 Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++SRWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G++ ++ P EV YPGG F+PL A +A K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 109 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17 Identity = 60/161 (37.27%), Postives = 86/161 (53.42%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++SRWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G++ ++ P EV YPGG F+PL A +A K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 109 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEG---YRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 265
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17 Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++ RWAMLG +G + PE+ +K G+ W+ AG +Y + + ++ + +L +VE R P DPI YPGG F+PL A +A K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 96 ELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDPI------------YPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVAN 252
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17 Identity = 62/161 (38.51%), Postives = 84/161 (52.17%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E++++RWAMLG +G L PE+ K G+ W+ AG A+ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A E K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 99 ELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVAN 255
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17 Identity = 61/161 (37.89%), Postives = 85/161 (52.80%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++ RWAMLG +G + PE+ + G+ W+ AG A+ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 105 ELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNN 261
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17 Identity = 62/161 (38.51%), Postives = 85/161 (52.80%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++ RWAMLG +G + PE+ + G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KEL GRLAML+ GF VQ VTGKGP ENL HI+DP +N Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNN 252
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17 Identity = 61/161 (37.89%), Postives = 86/161 (53.42%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++S WAMLG +G + PE+ ++ G+ W+ AG ++ F+ ++ L H I W + G+V ++ P EV YPGG F+PL A EA K KEL NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 37 ELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 193
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17 Identity = 60/171 (35.09%), Postives = 84/171 (49.12%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKA-------EYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++SRWAMLG +G + PE+ + G+ W+ AG +Y + S ++ + IL VE ++ P DPI YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H+++P +N Sbjct: 76 ELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVE--GYRIAGGPLGEVTDPI------------YPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNN 232
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17 Identity = 61/171 (35.67%), Postives = 86/171 (50.29%), Query Frame = 2 Query: 5 YVQAELVNSRWAMLGVVGMLLPEVFTKIGIINV--PQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIK------------NPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 Y + EL+++RWA+LG +G+L PE+ ++ + P W+ AG A+ FA ++ L H I ++ N GS + L + YPGG F+PL A E K KE+ NGRLAM + LGF VQ VTGKGP +NL H++DP N Sbjct: 79 YREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAG-AQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGS--------EGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVN 240
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17 Identity = 59/163 (36.20%), Postives = 82/163 (50.31%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 + E+++ RWAMLG +G + PE+ +K G+ W+ AG ++ F+ ++ L H I W V + Y + +G YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 96 ELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAIWA-----AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVAN 252 The following BLAST results are available for this feature:
BLAST of CX287500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287500 ID=CX287500; Name=CX287500; organism=Citrus clementina; type=EST; length=637bpback to top |