CX287500
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12 Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2 Query: 284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 YPGG F+PL A EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11 Identity = 54/157 (34.39%), Postives = 73/157 (46.50%), Query Frame = 2 Query: 14 AELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 481 AE+ + R AML VVG L+P+ K GI WY+A + A +F + +F ++ N DP YPG F+PLN TD KE E+ NGRLA+ A LGF VQ +V G P NL +H+ P I ++ Sbjct: 43 AEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---------EVARGVKENSDPT----------TIYPG--FDPLNLT-TDYTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSI 171
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11 Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = 2 Query: 2 WYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 421 WY +AEL++ RWAML V+G+ + + +T I W++AG A S TL + +L +VE +RW D +P S + + + +S E GYPGG F+PL+ A T + K E+ + RLAMLA L F + GK P Sbjct: 100 WYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTP 255
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11 Identity = 45/146 (30.82%), Postives = 70/146 (47.95%), Query Frame = 2 Query: 11 QAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 433 + EL++ RWAML +G L+ E T + W +AGK E +S + F + + W ++ G ++ P + YPGG+F+PL A DE K E+ + RLAM++F G+ VQ TG+G +L Sbjct: 135 ECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11 Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 2 Query: 284 YPGGIFNPLNFAPTDEAKE----KELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 YPG F+PL A EAK KE+ NGRLAM + GF VQ VTGKGP ENL H++DP N Sbjct: 74 YPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 137
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11 Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 2 Query: 284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463 YPGG F+PL EA K KE+ NGRLAM + GF VQ VTGKGP ENL H++DP +N Sbjct: 48 YPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111 The following BLAST results are available for this feature:
BLAST of CX287500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287500 ID=CX287500; Name=CX287500; organism=Citrus clementina; type=EST; length=637bpback to top |