CX287500

Overview
NameCX287500
Unique NameCX287500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   40 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 36/64 (56.25%), Postives = 42/64 (65.62%), Query Frame = 2
Query:  284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:  189 YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 54/157 (34.39%), Postives = 73/157 (46.50%), Query Frame = 2
Query:   14 AELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK-AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHNTIVQTL 481
            AE+ + R AML VVG L+P+   K GI     WY+A + A        +F   + +F         ++      N DP             YPG  F+PLN   TD  KE E+ NGRLA+ A LGF VQ +V G  P  NL +H+  P    I  ++
Sbjct:   43 AEVYHGRLAMLAVVGALVPDYLGK-GI-----WYEAAQNAGIGLKEVAIFTAAYGVF---------EVARGVKENSDPT----------TIYPG--FDPLNLT-TDYTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSI 171          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 54/163 (33.13%), Postives = 79/163 (48.47%), Query Frame = 2
Query:    2 WYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------DEAKEKELANGRLAMLAFLGFIVQHNVTGKGP 421
            WY +AEL++ RWAML V+G+ + + +T I       W++AG    A    S  TL   + +L  +VE +RW D  +P S + +         + +S    E GYPGG  F+PL+ A T             +  K  E+ + RLAMLA L F  +    GK P
Sbjct:  100 WYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAG-QGKTP 255          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 45/146 (30.82%), Postives = 70/146 (47.95%), Query Frame = 2
Query:   11 QAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDE-----AKEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 433
            + EL++ RWAML  +G L+ E  T +       W +AGK E   +S     + F +   +    W ++   G       ++     P +  YPGG+F+PL  A  DE      K  E+ + RLAM++F G+ VQ   TG+G   +L
Sbjct:  135 ECELIHGRWAMLACLGALVAEATTGVS------WVEAGKVELDGASYAGLSLPFSITQLI----WIEVILVGGAE---FYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 2
Query:  284 YPGGIFNPLNFAPTDEAKE----KELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            YPG  F+PL  A   EAK     KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   74 YPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVAN 137          
BLAST of CX287500 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 2
Query:  284 YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 463
            YPGG F+PL      EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   48 YPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
The following BLAST results are available for this feature:
BLAST of CX287500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2D_SOLLC4.895e-1256.25Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC4.895e-1256.25Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC4.895e-1256.25Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
LH18_EUGGR1.090e-1134.39Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4_SPIOL1.090e-1133.13Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB29_CHLRE2.429e-1130.82Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB22_PINSY4.144e-1154.69Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_RAPSA5.412e-1154.69Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionC01010C03SK Veg1 Citrus clementina cDNA clone C01010C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287500 ID=CX287500; Name=CX287500; organism=Citrus clementina; type=EST; length=637bp
GTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTG
TTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAAT
GTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATC
GACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAA
GATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTC
AAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTT
CAACCCACTCAACTTTGCACCCACTGATGAGGCAAAGGAGAAGGAGCTTG
CCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCAC
AATGTGACAGGCAAAGGGCCATTTGAAAACCTCCTGCAACATATCTCTGA
CCCATGGCACAACACCATCGTCCAGACACTTAGTGGTAATTAATCAAAGA
TGGATTGGCAATTCGGGATCCTGTTTCTTTCTTTTGTAACCATGAATCTG
TAGTTTTTGAGTGAGATTTGAGCATCAATGTAAACATGGAAACCCTCAAT
GTACAGGGGAACTATGATGGAATTTATATTATCATTT
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