CX287508
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 2 Query: 218 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN Sbjct: 191 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 255
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 56/157 (35.67%), Postives = 78/157 (49.68%), Query Frame = 2 Query: 2 ILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 IL K G+ E WF+ G I G +Y +P ++ ++ LMGF E R G +G G +K Y GG+ DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ DPV NN Sbjct: 117 ILSKNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR----VGGGPLGE----GLDKIYPGGAFDPL----------GLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANN 253
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 2 Query: 47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 WF+ G I G +Y +P +++ ++ LMG E R G +G + Y GGS DP +D + + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 129 WFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAG----GPLGE---IVDPLYPGGSFDPL----------GLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 2 Query: 47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 134 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 257
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-13 Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 2 Query: 218 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 188 YPGGSFDPL----------GLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13 Identity = 56/145 (38.62%), Postives = 69/145 (47.59%), Query Frame = 2 Query: 47 WFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTS 454 WF+ G I G NY + + +++ LMG AE R AN GS G L Y GG DP D + + K+KE+KNGRLAM + LG+FVQ +VTG GP QNL DHLADP N S Sbjct: 116 WFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEGFLDDLD-TLYPGGPFDPL----------GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFAS 245
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13 Identity = 52/141 (36.88%), Postives = 69/141 (48.94%), Query Frame = 2 Query: 47 WFQTGV-IPPAGTYNYWADPY--------TLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 WF+ G I G +Y P ++ ++ LMG E R G +G + Y GG+ DP D + D K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 143 WFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAG----GPLGE---VTDPIYPGGNFDPL----------GLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 266
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13 Identity = 52/141 (36.88%), Postives = 71/141 (50.35%), Query Frame = 2 Query: 47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GG+ DP D ++ D K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 130 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAG----GPLGE---VVDPLYPGGTFDPL----------GLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13 Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 2 Query: 47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP +D ++ + K+K +KNGRLAM ++ G+FVQ +VTG GP +NL DHLADPVNNN Sbjct: 132 WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG----GPLGE---VVDPLYPGGSFDPL----------GLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
BLAST of CX287508 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.582e-13 Identity = 51/141 (36.17%), Postives = 71/141 (50.35%), Query Frame = 2 Query: 47 WFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNN 442 WF+ G I G +Y +P ++ ++ LMG E R G +G + Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VTG GP +NL DH+ADPVNNN Sbjct: 127 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGE---VVDPLYPGGSFDPL----------GLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250 The following BLAST results are available for this feature:
BLAST of CX287508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287508 ID=CX287508; Name=CX287508; organism=Citrus clementina; type=EST; length=651bpback to top |