CX287524

Overview
NameCX287524
Unique NameCX287524
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.052e-30
Identity = 66/131 (50.38%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  249 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK E   K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQL
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQL 164          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.125e-27
Identity = 66/138 (47.83%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  231 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQL
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQL 208          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  321 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQM 136          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.165e-19
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  321 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQM 136          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.680e-18
Identity = 47/107 (43.93%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  330 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQL
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQL 138          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.773e-15
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  321 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQL
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQL 139          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.068e-15
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  330 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV L
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLL 139          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  306 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAEGVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQL 638
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV L
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLL 138          
BLAST of CX287524 vs. ExPASy Swiss-Prot
Match: PSBO_BRARA (Oxygen-evolving enhancer protein 1, chloroplastic (Fragment) OS=Brassica rapa GN=PSBO PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 3
Query:  285 EGVPKRLTYDEIQSKTYMEVKGTGTANQCPT 377
            EG PKRLTYDEIQSKTYMEVKGTGTANQCPT
Sbjct:    1 EGAPKRLTYDEIQSKTYMEVKGTGTANQCPT 31          
The following BLAST results are available for this feature:
BLAST of CX287524 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE3.052e-3050.38Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR4.125e-2747.83Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_THEEB3.165e-1944.44Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN3.165e-1944.44Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_ANASP2.680e-1843.93Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA52.773e-1542.59Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY38.068e-1540.95Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE72.347e-1438.05Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_BRARA9.231e-1196.77Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01010E05SK Veg1 Citrus clementina cDNA clone C01010E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287524 ID=CX287524; Name=CX287524; organism=Citrus clementina; type=EST; length=639bp
GTAACCCACAAGTGGTAGGGAGCAAGATGGCAGCCTCGTTACAAGCCGCA
GCTACACTGATGCAACCCACCAAGGTGGGTGTGGTACCCGCTCGCAGCAG
CAGCCTGCAGCTGAGGTCTTCACAGAGCGTTTCGAAGGCTTTTGGTGTCG
ACTCAGCTGGTGCTAGGATCTCTTGCTCTTTGAATAATGACTTGAAGGAT
TTGGCTCAGAAATGTGTTGATGCTACCAAGATCGCTGGCTTTGCCCTCGC
CACTTCTGCTCTCGTCGTTTCGGGAGCAAGTGCTGAAGGTGTTCCAAAGA
GGCTAACCTATGATGAAATCCAGAGCAAGACATACATGGAAGTGAAGGGA
ACCGGAACTGCTAACCAGTGCCCAACCATTGATGGCGGAGTTGACTCTTT
TGCCTTCAAACCTGGCAAATACCAGGCTAAGAAGTTCTGCCTAGAACCAA
CTTCCTTCACTGTCAAGGCTGAGGGTGTCAACAAGAATGCCCCACCAGAT
TTCCAGAACACCAAGCTCATGACCCGCCTTACCTACACCCTTGACGAGAT
TGAGGGACCTTTTGAAGTGTCCCCCGATGGCACCATTAAGTTTGTGGAGA
AGGATGGAATTGACTATGCTGCTGTGACAGTTCAACTGG
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