CX287581

Overview
NameCX287581
Unique NameCX287581
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHY1_PHYPA (Phytochrome 1 OS=Physcomitrella patens GN=PHY1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.067e-13
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR++HPG G+P  L+ +MY+ R +  T EGLGL + RKL+ +MNG V YVRE  +CYFV+++EL
Sbjct: 1049 FRVSHPGAGLPEELVLEMYD-RGKGMTQEGLGLNMCRKLVRLMNGDVHYVREAMQCYFVVNVEL 1111          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHY1_SELMA (Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.035e-12
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR+THPG G+P  L+++M++ R +  T EGLGL + RKL+ +MNG V Y+RE  K YF++ LEL
Sbjct: 1055 FRITHPGVGLPEELVQEMFD-RGRGMTQEGLGLSMCRKLVKLMNGEVEYIREAGKNYFLVSLEL 1117          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYD_ARATH (Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.707e-12
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR+   GEG+P   ++DM++  ++WT+PEGLGL + RK+L +MNG V+Y+RE  + YF+I +EL
Sbjct: 1091 FRMACAGEGVPPEKVQDMFHS-SRWTSPEGLGLSVCRKILKLMNGGVQYIREFERSYFLIVIEL 1153          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSJ (Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M G V+Y+RE+ + +F I LEL
Sbjct: 1097 FRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLMGGEVQYIRESERSFFHIVLEL 1159          
BLAST of CX287581 vs. ExPASy Swiss-Prot
Match: PHYB_ORYSI (Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.144e-11
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = -1
Query:  384 FRLTHPGEGIPSHLIEDMYNGRNQWTTPEGLGLKLSRKLLIMMNGRVRYVRENSKCYFVIDLEL 575
            FR   PGEG+P  +++DM++  ++WTT EG+GL + RK+L +M G V+Y+RE+ + +F I LEL
Sbjct: 1097 FRFACPGEGLPPEIVQDMFSN-SRWTTQEGIGLSICRKILKLMGGEVQYIRESERSFFHIVLEL 1159          
The following BLAST results are available for this feature:
BLAST of CX287581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PHY1_PHYPA6.067e-1353.13Phytochrome 1 OS=Physcomitrella patens GN=PHY1 PE=... [more]
PHY1_SELMA1.035e-1251.56Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=... [more]
PHYD_ARATH6.707e-1248.44Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1... [more]
PHYB_ORYSJ1.144e-1146.88Phytochrome B OS=Oryza sativa subsp. japonica GN=P... [more]
PHYB_ORYSI1.144e-1146.88Phytochrome B OS=Oryza sativa subsp. indica GN=PHY... [more]

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Properties
Property NameValue
Genbank descriptionC01011B04SK Veg1 Citrus clementina cDNA clone C01011B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287581 ID=CX287581; Name=CX287581; organism=Citrus clementina; type=EST; length=575bp
CGGCACGAGGTTTTTTTTTTTTTTTTTGACAAAACCGCTTTTGATTTCAT
TCATGATTTTACCAGTGTATATAAAACATTTCCAAAACATGCTTACGTTA
CGACTGCATACTAAGCTGTAAAGCCACAATTACAAAGCTGCTGCAACAGT
AAAGCAAGTGCATGTTAGGAAATACTATTTTGCAAATGAACAGTTTCTAA
CCGAACATTTACGTTGATAAAAGAACATGATCTGCTGCAAGACTCAGGCT
TCACCAGATGCTCCTTTGATGTCCCAGGCCATGCTAGGACAGAATCTAAT
GGACTCGTGTGCATGCAAACAAGAAGAGTGTGGTGATTTAAATTATGCCA
TTCTAATTACATCTTTTGTCTTCCTCTAGTTTTGAGTTCAAGGTCGATGA
CGAAATAACACTTGCTATTTTCTCTGACATAGCGGACTCGGCCATTCATC
ATGATGAGAAGTTTTCGAGACAGTTTCAACCCTAAACCCTCCGGTGTAGT
CCACTGATTTCTACCATTATACATATCTTCAATAAGATGAGAGGGAATGC
CTTCACCAGGATGAGTCAGTCTGAA
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