CX287590

Overview
NameCX287590
Unique NameCX287590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: YN4A_SCHPO (PRELI/MSF1 domain-containing protein C36.10 OS=Schizosaccharomyces pombe GN=SPBC36.10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 52/173 (30.06%), Postives = 100/173 (57.80%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHK-LDPLSGKLYTTRALTVHAPGP-WFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERI 582
            +K +   H++++P+E+V++A W+K+ +       +H++ VDTL+ K LD  +G LYT R +T H   P W ++ I G   C+  E++ VD +++++ L T N++    + V+E + Y PHP+     TV +QE   RI+ L+ +  ++  +E    + F + + +G+E  E +
Sbjct:    1 MKIFESCHLFQYPFEQVSAAHWQKYPNEH----ATHVIAVDTLDRKVLD--NGVLYTERLITCHQALPRWILKLIDGAQDCYIRETSYVDLKARTLTLLTSNLTFSDRLRVDETVTYSPHPELEA--TVFQQEA--RIEALACMKRLSNLIEQWSVDGFGKKASRGKEGFESV 163          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO1_XENLA (Protein slowmo homolog 1 OS=Xenopus laevis GN=slmo1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.417e-17
Identity = 57/179 (31.84%), Postives = 96/179 (53.63%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG--QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEA 600
            ++ ++ EH++ HPW+ V  A+ RK+ +P N      ++ VD ++  LD   G+L++ R L      P  VR I+G  + + +  E +VVD   K M L + N+SL   + V+E++ Y PHP+NP   TV  QE  I +K +    S++  +E   A     N+ KG + +E I +  E+
Sbjct:    1 MRIWSSEHVFSHPWDTVIKAAMRKYPNPMNPC----VVGVDVVDRNLDS-QGRLHSQRLLCTEWGLPSLVRAILGTSRTLTYIKEHSVVDPVEKKMVLCSTNISLTNLVSVDERLVYTPHPENPE-QTVLTQEAIITVKGV----SLSSYLEGLMASTISSNARKGWDAIEWIIQNSES 169          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: MSF1_YEAST (Protein MSF1 OS=Saccharomyces cerevisiae GN=AIM30 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.123e-17
Identity = 46/166 (27.71%), Postives = 91/166 (54.82%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGP-WFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGR 564
            +K +   + + +PW++VT+A+W+K+ +  +    +H++ VD L  +L      L T R +TV    P W +  + G ++ H  E +VVD   KS+ + + N+++   ++V E + Y PHPD+    T+ +QE   +I    ++  +  K+E    ++F +N+ KG+
Sbjct:    1 MKLFQNSYDFNYPWDQVTAANWKKYPNEIS----THVIAVDVLRRELKDQGKVLVTERLITVKQGVPKWIMMMLGGTNMSHVREVSVVDLNKKSLTMRSCNLTMCNLLKVYETVTYSPHPDDSANKTLFQQEA--QITAYGSIRKLCNKMEDWSVQRFCENAKKGK 160          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: SLMO_DROME (Protein slowmo OS=Drosophila melanogaster GN=slmo PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 54/184 (29.35%), Postives = 94/184 (51.09%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIG-QDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAESRGIS 618
            +K +T EHI+ HPWE VT A+WRK+ +P        I+  D +  ++  + G L+T R +      P +   +IG    C   E + VD + K M L T N++  + I V+E + YEPHP + +  T+ +QE ++ +  +     ++  +E         N+ KGR+ +E +   +  E +GI+
Sbjct:    1 MKIWTSEHIFNHPWETVTQAAWRKYPNP----MTPSIIGTDVVERRV--VDGVLHTHRLVQSKWYFPKWTHALIGTAKTCFASERSTVDPERKQMVLKTNNLTFCRNISVDEVLYYEPHPSDASK-TLLKQEATVTVFGV----PLSHYMEDLLTSTISTNAGKGRQGLEWVIGLINTEVKGIA 173          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: YD185_YEAST (PRELI/MSF1 domain-containing protein YDR185C OS=Saccharomyces cerevisiae GN=YDR185C PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.672e-16
Identity = 47/168 (27.98%), Postives = 95/168 (56.55%), Query Frame = 1
Query:   70 VKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQ-DICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSAL--ASMAEKVELRCAEKFMQNSVKGR 564
            +K++ + + + +PWE+VT+A+W K+ +    +  +H++ VD L  +L      L T R +T+    P ++  ++G  ++ +  E + VD + +S+ + + N++    ++  E +RY PHP NP+  T+ +Q+     K LS +   + +EKVE    ++F  N+VKG+
Sbjct:    1 MKSFQKSYEFDYPWEKVTTANWMKYPN----KISTHVIAVDVLRRELKEHGDVLLTERLITIRQNTPHWMSILVGNTNLAYVREVSTVDRRDRSLTMRSCNMTFPHILKCYETVRYVPHPKNPSNVTLFKQDA----KFLSGVPTKTFSEKVENWGVKRFSDNAVKGK 160          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: RETM_AEDAE (Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 51/185 (27.57%), Postives = 92/185 (49.73%), Query Frame = 1
Query:   67 MVKAYTQE-HIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAESRGIS 618
            MV+ Y     IYK+P+E V +A  R+F        +  +L+ + ++        K  T R   +    P+  +KIIG D+ + +++  +D +++++ +   N +    IE+ EK RY  HP+NP  WT   Q  ++ IK         EK+ ++   ++ Q + KG+E++E     L+ E  GIS
Sbjct:    1 MVQKYESPVRIYKYPFELVMAAYERRFPTCPQ---MPIVLDCEIIDDAETDNGAKRETKRRCKLAVDAPYLFKKIIGIDVAYFIQTNFLDLKTRTLNIEAINETFSSRIEIFEKCRYYAHPENP-DWTCFDQVATLDIKNFFGFEHSMEKMGMK---QYSQTTQKGKEIIEYFINELKKE--GIS 176          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: RETM_DROPS (Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.612e-13
Identity = 46/170 (27.06%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   94 IYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +YK+P+E V  A  R+F        +  +L+ D +  +      K  TTR   +    P+  +K+IG D  + ++   +D  ++++ +   N S    IE+ E+ RY  HPDN   WT   Q  ++ IK         EK+ ++   ++ Q ++KG+E++E     LE E
Sbjct:   11 VYKYPFELVMKAYERRFPKCPQ---MPIVLDCDVIKIESLENGAKTNTTRRCKLAVDAPYIFKKLIGVDFVYFLQHNYLDMSNRTLSIEAVNESFSSRIEIFERCRYYAHPDN-AEWTCFDQTATLDIKNFFGFEHSMEKMGMK---QYTQTTLKGKEIIEYFINQLEQE 173          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: PRLD1_MOUSE (PRELI domain-containing protein 1, mitochondrial OS=Mus musculus GN=Prelid1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 49/183 (26.78%), Postives = 94/183 (51.37%), Query Frame = 1
Query:   67 MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCV---ESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 606
            MVK +  + + +  W++V +A W+++ +P +K    H+L  D ++ ++ P   KL + R LT     P +  ++   ++ H V   E ++VD Q+++M   T N++  + + VEE+  Y  + DN +GWT  R+E  +     S+L  ++  V+     +F  N  K  +  E I   L+ E+
Sbjct:    1 MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSK----HVLTEDIVHREVTP-DQKLLSRRLLTKTNRMPRWAERLFPANVAHSVYILEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDN-SGWTEIRREAWVS----SSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEA 173          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: PRLD1_HUMAN (PRELI domain-containing protein 1, mitochondrial OS=Homo sapiens GN=PRELID1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 49/183 (26.78%), Postives = 94/183 (51.37%), Query Frame = 1
Query:   67 MVKAYTQEHIYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCV---ESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAES 606
            MVK +  + + +  W++V +A W+++ +P +K    H+L  D ++ ++ P   KL + R LT     P +  ++   ++ H V   E ++VD Q+++M   T N++  + + VEE+  Y  + DN +GWT  R+E  +     S+L  ++  V+     +F  N  K  +  E I   L+ E+
Sbjct:    1 MVKYFLGQSVLRSSWDQVFAAFWQRYPNPYSK----HVLTEDIVHREVTP-DQKLLSRRLLTKTNRMPRWAERLFPANVAHSVYVLEDSIVDPQNQTMTTFTWNINHARLMVVEERCVYCVNSDN-SGWTEIRREAWVS----SSLFGVSRAVQEFGLARFKSNVTKTMKGFEYILAKLQGEA 173          
BLAST of CX287590 vs. ExPASy Swiss-Prot
Match: RETM_DROME (Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 43/170 (25.29%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   94 IYKHPWERVTSASWRKFADPENKRTLSHILEVDTLNHKLDPLSGKLYTTRALTVHAPGPWFVRKIIGQDICHCVESTVVDAQSKSMQLTTRNVSLKKYIEVEEKIRYEPHPDNPTGWTVCRQETSIRIKPLSALASMAEKVELRCAEKFMQNSVKGREVMERICKYLEAE 603
            +YK+P+E V  A  R+F        +  +L+ + +  +      K  T+R   +    P+  +K+IG D  + ++   +D  ++++ +   N S    IE+ E+ RY  HPDN + WT   Q  ++ IK         EK+ ++   ++ Q ++KG+E++E     L  E
Sbjct:   11 VYKYPFELVMKAYERRFPTCPQ---MPIVLDCEVIKDESLEDGAKRNTSRRCKLAVDAPYIFKKLIGVDHVYFLQHNFLDLANRTLSIEAVNESFSSRIEIFERCRYYAHPDN-SEWTCFDQSATLDIKNFFGFEHSMEKMGMK---QYTQTTLKGKEIIEFFIGQLREE 173          
The following BLAST results are available for this feature:
BLAST of CX287590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
YN4A_SCHPO1.085e-1730.06PRELI/MSF1 domain-containing protein C36.10 OS=Sch... [more]
SLMO1_XENLA1.417e-1731.84Protein slowmo homolog 1 OS=Xenopus laevis GN=slmo... [more]
MSF1_YEAST4.123e-1727.71Protein MSF1 OS=Saccharomyces cerevisiae GN=AIM30 ... [more]
SLMO_DROME1.567e-1629.35Protein slowmo OS=Drosophila melanogaster GN=slmo ... [more]
YD185_YEAST2.672e-1627.98PRELI/MSF1 domain-containing protein YDR185C OS=Sa... [more]
RETM_AEDAE2.766e-1327.57Protein real-time OS=Aedes aegypti GN=retm PE=3 SV... [more]
RETM_DROPS3.612e-1327.06Protein real-time OS=Drosophila pseudoobscura pseu... [more]
PRLD1_MOUSE1.518e-1126.78PRELI domain-containing protein 1, mitochondrial O... [more]
PRLD1_HUMAN1.518e-1126.78PRELI domain-containing protein 1, mitochondrial O... [more]
RETM_DROME4.415e-1125.29Protein real-time OS=Drosophila melanogaster GN=re... [more]

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Properties
Property NameValue
Genbank descriptionC01011C01SK Veg1 Citrus clementina cDNA clone C01011C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287590 ID=CX287590; Name=CX287590; organism=Citrus clementina; type=EST; length=662bp
CTCGTGCCGGTTTTCAAGGGTTTTAATGCTCTGCGGTCTGCAATTCTGTT
TGTCTTAAAGATCGTGATGGTGAAAGCATACACACAAGAGCACATTTACA
AGCACCCGTGGGAGCGTGTTACTTCTGCATCTTGGCGCAAGTTTGCTGAC
CCTGAGAACAAGCGCACGTTATCCCATATACTTGAAGTGGACACTTTGAA
CCACAAGCTCGATCCTCTATCTGGCAAGCTATACACAACGCGTGCACTCA
CTGTCCATGCCCCTGGACCTTGGTTTGTTCGCAAAATTATTGGTCAAGAT
ATATGTCACTGTGTTGAATCAACGGTTGTTGATGCCCAGTCAAAGTCAAT
GCAGCTCACTACTCGCAATGTTAGTCTAAAAAAGTATATAGAAGTGGAGG
AGAAGATCCGATACGAACCCCATCCTGATAATCCAACTGGTTGGACAGTT
TGTAGACAAGAGACAAGTATAAGGATTAAGCCATTATCGGCACTGGCATC
AATGGCAGAGAAGGTGGAGCTACGATGTGCAGAAAAGTTCATGCAGAATA
GTGTCAAGGGTAGAGAAGTAATGGAGAGGATCTGTAAGTACCTTGAAGCT
GAATCTCGTGGAATTTCTCTCTAGTTTCTAGTTTTTGAGTTCAATTTCTG
AGTTTTATAGTA
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