CX287616

Overview
NameCX287616
Unique NameCX287616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.463e-16
Identity = 47/93 (50.54%), Postives = 57/93 (61.29%), Query Frame = -3
Query:  165 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREI--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 437
            +++S+ GHDGPFGA   KR+  I     + GMK LDMN AE  +V  +     V  M   GMEVAE+DG  RMGPTFGAM +SG  AA   LK
Sbjct:  230 VILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILK 322          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_PYRAR (Putative thiazole biosynthetic enzyme OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=Pars_1498 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.144e-13
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  153 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 440
            K V+ + GHD    +   +++  +G+   +PG K+     +E  +V  T ++ PG+ VTGM VA + G PRMGP FG MM+SG+K A +  K L +
Sbjct:  161 KAVIDATGHDAEVISVAARKVPELGI--QLPGEKSAWSEVSEKLVVEYTGKVAPGLYVTGMAVAAVHGLPRMGPIFGGMMLSGKKIAEIVAKDLAE 254          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_PYRHO (Putative thiazole biosynthetic enzyme OS=Pyrococcus horikoshii GN=PH1357 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 42/94 (44.68%), Postives = 52/94 (55.32%), Query Frame = -3
Query:  159 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 440
            K V+ S GH        VKR    G++  +PG  A+     E   V+ TRE+ PG+ VTGM    I GAPRMGP FG M +SG+KAA   LK L
Sbjct:  161 KYVIDSTGHGAQVAQFLVKR----GLLKEIPGEGAMWAEQGEKLTVKNTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGRKAAQEILKKL 250          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_PYRFU (Putative thiazole biosynthetic enzyme OS=Pyrococcus furiosus GN=PF1530 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.951e-13
Identity = 41/95 (43.16%), Postives = 54/95 (56.84%), Query Frame = -3
Query:  156 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 440
            K V+ S GH    GA   + L   G+I+ +PG  A+     E   V  T+E+ PG+ VTGM    + GAPRMGP FG M +SG+KAA   L+ LG
Sbjct:  161 KYVIDSTGH----GAQVTQFLLKRGLIEKIPGEGAMWAEMGEKLTVENTKEVFPGLYVTGMAANAVSGAPRMGPIFGGMFLSGRKAAMEILQKLG 251          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_AERPE (Putative thiazole biosynthetic enzyme OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.548e-13
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = -3
Query:  156 VVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG 434
            VV + GHD    A   ++L   GM+++   +  + +  +ED +V  T E+ PG++V G+ VAE+ G PRMGPTFGAM++SG+KAA L  + LG
Sbjct:  170 VVDATGHD----AVVTRKLAERGMVEASK-LGPMWVERSEDLVVEKTGEVYPGLVVAGIAVAEVYGLPRMGPTFGAMLLSGEKAAALIGEKLG 257          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_SULTO (Putative thiazole biosynthetic enzyme OS=Sulfolobus tokodaii GN=ST0361 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.347e-13
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = -3
Query:  159 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 440
            K VV + GHD    +   +++  + ++  +PG K+    TAE+  V  T  + PG+   GM V E+ G PRMGP FGAM++SG++ A + +K L
Sbjct:  172 KAVVDATGHDAEVISVAARKIPELNIV--IPGEKSAYSETAEELTVENTGMVAPGLYAAGMAVTEVKGLPRMGPIFGAMVLSGKRVAEIIIKDL 263          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_PYRKO (Putative thiazole biosynthetic enzyme OS=Pyrococcus kodakaraensis GN=TK0434 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 41/96 (42.71%), Postives = 55/96 (57.29%), Query Frame = -3
Query:  153 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 440
            K VV S GH    GA   + L   G+I ++PG   +     E+  V  TRE+ PG+  TGM    + GAPRMGP FG M++SG+KAA   L+ LG+
Sbjct:  160 KFVVDSTGH----GAQISQHLLKRGLIKAIPGEGPMWAEKGEELTVEHTREVFPGLYATGMAANALAGAPRMGPIFGGMLLSGRKAALEILQKLGK 251          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_PYRAB (Putative thiazole biosynthetic enzyme OS=Pyrococcus abyssi GN=PYRAB07910 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.677e-13
Identity = 42/94 (44.68%), Postives = 53/94 (56.38%), Query Frame = -3
Query:  159 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 440
            K V+ S GH    GA   + L   G+I+ +PG  A+     E   V  TRE+ PG+ VTGM    I GAPRMGP FG M +SG+KAA   L+ L
Sbjct:  161 KYVIDSTGH----GAQVAQFLLKRGLIERIPGEGAMWAEQGERLTVENTREVFPGLYVTGMAANAIAGAPRMGPIFGGMFLSGKKAAQEILEKL 250          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_SULAC (Putative thiazole biosynthetic enzyme OS=Sulfolobus acidocaldarius GN=Saci_0854 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.652e-12
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = -3
Query:  159 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 440
            K VV + GHD    A   +++  +G++  +PG ++     AE   V  T  + PG+ V GM V E+ G PRMGP FG+M++SG+K A   +K L
Sbjct:  171 KAVVDATGHDAEVVAVASRKIPELGIV--IPGERSAYSEMAEKLTVEQTGVVAPGLYVAGMSVTEVRGLPRMGPIFGSMVLSGKKVAEDIIKDL 262          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_METS5 (Putative thiazole biosynthetic enzyme OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=Msed_2221 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.818e-12
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = -3
Query:  159 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 440
            K VV + GHD    +   +++  +G++  +PG K+     AE   V  + E+ PG+   GM V EI   PRMGP FGAM++SG+K A   +K L
Sbjct:  167 KAVVDATGHDAEVISVASRKIPELGIV--IPGEKSAYSEIAEQLTVEQSGEVAPGLYAAGMAVTEIKAIPRMGPIFGAMLLSGKKVAEDIIKNL 258          
The following BLAST results are available for this feature:
BLAST of CX287616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
THI4_YEAST2.463e-1650.54Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_PYRAR1.144e-1337.50Putative thiazole biosynthetic enzyme OS=Pyrobacul... [more]
THI4_PYRHO1.951e-1344.68Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRFU1.951e-1343.16Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_AERPE2.548e-1343.01Putative thiazole biosynthetic enzyme OS=Aeropyrum... [more]
THI4_SULTO4.347e-1337.23Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_PYRKO5.677e-1342.71Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_PYRAB5.677e-1344.68Putative thiazole biosynthetic enzyme OS=Pyrococcu... [more]
THI4_SULAC1.652e-1238.30Putative thiazole biosynthetic enzyme OS=Sulfolobu... [more]
THI4_METS52.818e-1238.30Putative thiazole biosynthetic enzyme OS=Metallosp... [more]

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Properties
Property NameValue
Genbank descriptionC01011E03SK Veg1 Citrus clementina cDNA clone C01011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287616 ID=CX287616; Name=CX287616; organism=Citrus clementina; type=EST; length=451bp
TCGGCACGAGGTTGAATTCTCATCAAAATGTACATAATTCTCAGATTTTA
TAATTTTTAAGCATCAACAATCTCGCTGTTCTCAGTGGCCGCAAGGACAA
ACTCTGGCTGTACTTCCGTAACTTCACTGAATGTCCCATCTATCGCATTC
GGCTGCCCCAATGCCTTCAACGCCAAATGGGCTGCCTTCTGCCCTGAAAT
CATCATGGCCCCGAATGTAGGTCCCATTCTAGGGGCACCGTCGATCTCTG
CGACTTCCATGCCCGTGACAATCATGCCAGGCACGATCTCCCTGGTAAGC
CTAACGATAGCATCCTCTGCAGTGTTCATATCGAGAGCTTTCATTCCGGG
GACGGAGTCAATCATGCCAATACTCTTAAGCCTCTTAACACCGGTAGCCC
CAAAAGGGCCGTCATGGCCACACGAGCTGACCACAATCTTGCGGCACGAG
G
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