CX287617

Overview
NameCX287617
Unique NameCX287617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 51/135 (37.78%), Postives = 79/135 (58.52%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL------MNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTG-KAPLQSPTRDDMVDLPRWVQSVVRE 392
            G+ PLDW TR+KI  G ARG+ ++H    P   + ++K SN+L+ +D    +SDFGL  +       +V      + GY AP+   T + + KSD+YSFGV+LLE++TG KA   + TR D  +L  W + + ++
Sbjct:  195 GKKPLDWNTRMKIAAGAARGLEYLHDRMTPPVIYRDLKCSNILLGEDYQPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDNTKTRKDQ-NLVGWARPLFKD 328          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 54/146 (36.99%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   12 RTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATP--------SRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            R  LDWETR +I+ G ARG+ ++H     K  H ++KASNVL++  ++  I+DFG+  L +   T         + + GY APE   + + S K+DV+SFGVL+LE++ GK    SP  D  + L  +V    RE     + D  L
Sbjct:  435 RMILDWETRYRIISGVARGLLYLHEDSRFKIVHRDMKASNVLLDDAMNPKIADFGMAKLFDTDQTSQTRFTSKVAGTYGYMAPEYAMSGEFSVKTDVFSFGVLVLEIIKGKKNNWSPEEDSSLFLLSYVWKSWREGEVLNIVDPSL 580          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.889e-18
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3
Query:   18 PLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM-----NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGK 320
            PL+W  R KI+LGTA G+A++H     +  H +IK SN+L+  D    I+DFGL  L      ++    + + GY APE +   K + K+DVYSFGVL++E++TGK
Sbjct:  416 PLNWAKRFKIILGTAEGMAYLHEESNLRIIHRDIKLSNILLEDDFTPRIADFGLARLFPEDKTHISTAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLMIEVITGK 521          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.773e-18
Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   12 RTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL-----MNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            R  LDW TR KI +G A+G+A++H     K  H +IKA+NVL++  L+  ISDFGL  L      ++    + + GY APE       + K+DVYSFGV+ LE+++GK+      +++ V L  W   +  +    E+ D +L
Sbjct:  761 RLHLDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLNDDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGSLLELVDPDL 903          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: CRK26_ARATH (Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.773e-18
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSR-------SAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDL 362
            L+WE R KI+ G ARG+ ++H     +  H ++KASN+L+++++   I+DFG+  L ++  T  R       + GY APE +   + S K+DVYSFGVL+LE+++GK      + D M DL
Sbjct:  438 LEWEIRYKIIGGVARGLLYLHQDSRLRIIHRDLKASNILLDEEMTPKIADFGMARLFDIDHTTQRYTNRIVGTFGYMAPEYVMHGQFSFKTDVYSFGVLVLEIISGKKNSGFSSEDSMGDL 558          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y1061_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610 OS=Arabidopsis thaliana GN=At1g50610 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.927e-18
Identity = 48/146 (32.88%), Postives = 87/146 (59.59%), Query Frame = 3
Query:    3 ARGRTPLDWETRVKILLGTARGVAHIHS-MGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLMNVPATPSRSAGYRAPEVIETRKH--SHKSDVYSFGVLLLEMLTGKAPLQSPTR--DDMVDLPRWVQSVVREEWTAEVFDVEL 425
            A     LDW TR+KI+ G A+G++++   +      HG++K+SN++++   +  ++D+ L P+M+     +    Y++PE   ++    + K+DV+ FGVL+LE+LTG+ P    T+  D  + L  WV  +V+E+ T +VFD E+
Sbjct:  462 ANNSAGLDWITRLKIIKGVAKGLSYLFDELPTLTIPHGHMKSSNIVLDDSFEPLLTDYALRPMMSSEHAHNFMTAYKSPEYRPSKGQIITKKTDVWCFGVLILEVLTGRFPENYLTQGYDSNMSLVTWVNDMVKEKKTGDVFDKEM 607          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.927e-18
Identity = 48/122 (39.34%), Postives = 71/122 (58.20%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL-----MNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRW 371
            L W  RVK+ LGTA+ + ++H +  P   H N K++N+L++++L+  +SD GL  L       V      S GY APE   +  ++ KSDVY+FGV++LE+LTG+ PL S        L RW
Sbjct:  492 LTWNARVKVALGTAKALEYLHEVCLPSIVHRNFKSANILLDEELNPHLSDSGLAALTPNTERQVSTQVVGSFGYSAPEFALSGIYTVKSDVYTFGVVMLELLTGRKPLDSSRTRAEQSLVRW 613          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.927e-18
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 3
Query:   21 LDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM------NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVRE 392
            L WETR ++ +  A+G+ ++H    P   H ++K++N+L++ D +  ++DFGL   +         ++ + S GY APE   T K   KSDVYSFGV+LLE++ GK P+      + VD+ RWV++   E
Sbjct:  786 LQWETRHRVAVEAAKGLCYLHHDCSPLILHRDVKSNNILLDSDFEAHVADFGLAKFLVDGAASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGKKPVGE--FGEGVDIVRWVRNTEEE 913          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.435e-18
Identity = 50/143 (34.97%), Postives = 80/143 (55.94%), Query Frame = 3
Query:   12 RTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPL-----MNVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            R  LDW TR K+ +G A+G+A++H     K  H +IKA+NVL++  L+  ISDFGL  L      ++    + + GY APE       + K+DVYSFGV+ LE+++GK+      +++ + L  W   +  +    E+ D +L
Sbjct:  759 RLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDL 901          
BLAST of CX287617 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.435e-18
Identity = 50/144 (34.72%), Postives = 81/144 (56.25%), Query Frame = 3
Query:    9 GRTPLDWETRVKILLGTARGVAHIHSMGGPKFTHGNIKASNVLINQDLDGCISDFGLTPLM-----NVPATPSRSAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPTRDDMVDLPRWVQSVVREEWTAEVFDVEL 425
            G   LDW  R+ I+ G + G+A++H +  P   H +IK+SN+L++ +    ++DFGL+ L+     +V      + GY  PE  +    + + DVYSFGV++LE+LTGK P++        +L  WV ++ R+    EVFD  L
Sbjct:  894 GPAQLDWPKRLNIMRGASSGLAYMHQICEPHIVHRDIKSSNILLDGNFKAYVADFGLSRLILPYRTHVTTELVGTLGYIPPEYGQAWVATLRGDVYSFGVVMLELLTGKRPMEVFRPKMSRELVAWVHTMKRDGKPEEVFDTLL 1037          
The following BLAST results are available for this feature:
BLAST of CX287617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 246
Match NameE-valueIdentityDescription
RLCK7_ARATH2.889e-1837.78Probable serine/threonine-protein kinase RLCKVII O... [more]
CRK41_ARATH2.889e-1836.99Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
CRK3_ARATH2.889e-1842.45Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
Y5343_ARATH3.773e-1836.36Probable LRR receptor-like serine/threonine-protei... [more]
CRK26_ARATH3.773e-1838.84Cysteine-rich receptor-like protein kinase 26 OS=A... [more]
Y1061_ARATH4.927e-1832.88Probably inactive leucine-rich repeat receptor-lik... [more]
SRF8_ARATH4.927e-1839.34Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
CLV1_ARATH4.927e-1836.15Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
Y5344_ARATH6.435e-1834.97Probable LRR receptor-like serine/threonine-protei... [more]
PSYR1_ARATH6.435e-1834.72Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC01011E04SK Veg1 Citrus clementina cDNA clone C01011E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287617 ID=CX287617; Name=CX287617; organism=Citrus clementina; type=EST; length=426bp
CGGCACGAGGTAGAACTCCACTGGACTGGGAGACAAGAGTAAAGATATTG
CTTGGGACAGCAAGGGGCGTTGCCCACATTCATTCTATGGGTGGTCCAAA
ATTCACTCATGGAAATATTAAAGCCTCAAATGTCCTCATCAACCAAGATC
TTGATGGATGCATCTCTGATTTTGGACTGACCCCTCTTATGAATGTCCCT
GCCACACCATCTCGGAGTGCAGGCTACCGTGCTCCTGAGGTGATTGAAAC
CCGTAAGCACAGTCATAAATCAGACGTGTATAGTTTTGGTGTCCTTCTCC
TTGAGATGCTGACTGGGAAAGCTCCACTCCAGTCACCAACGCGTGATGAT
ATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTCGGGAAGAATGGAC
AGCTGAGGTTTTTGATGTCGAGTTGA
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