CX287640
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.359e-44 Identity = 78/129 (60.47%), Postives = 101/129 (78.29%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS++ P ++++N SNGGR++CM+VWP G+KKFETLSYLPPLS E LLK++ YL+RS W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GC TQV+ EV E Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEE 135
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 3.028e-44 Identity = 80/129 (62.02%), Postives = 105/129 (81.40%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ VAPF GLKS+++ P ++++ + ++ SNGGR++CM+VWP G KKFETLSYLPPLS + LLK++ YLLR+GWIPCLEF + G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E Sbjct: 9 SSATAVAPFQGLKSTASLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQE 135
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 8.810e-44 Identity = 78/129 (60.47%), Postives = 102/129 (79.07%), Query Frame = 1 Query: 22 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 + A+ APF GLKS+++ P +++ + + SNGGR++CM+VWP G KKFETLSYLPPL+ E LLK++ YLLR+ W+PCLEF E G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E Sbjct: 8 SSATAAAPFQGLKSTASLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQE 134
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 3.348e-43 Identity = 81/139 (58.27%), Postives = 106/139 (76.26%), Query Frame = 1 Query: 4 ARGASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 A GA A++V+ FTGLKS++ FP++ K +N SNGGRV+CM+VWPP G KFETLSYLP L++E L+KE+ YLLR+ W+PCLEF+LE G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E Sbjct: 2 ATGAGAGAATVVSAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRE 139
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 2.399e-41 Identity = 74/101 (73.27%), Postives = 84/101 (83.17%), Query Frame = 1 Query: 106 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 T I SNG RV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YLLR GW+PCLEFEL KG+VY EH+ SP YYDGRYWTMWKLPM+G TD QV+KEV E Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDE 102
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.317e-39 Identity = 77/139 (55.40%), Postives = 100/139 (71.94%), Query Frame = 1 Query: 4 ARGASLAQASMVAPFTGLKSSSAFPATKKTNNDITS----IASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 A + +++V+ FTGLKS + FP++K +N SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ YLL++ W+PCLEFE E G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E Sbjct: 18 AAPSKTGNSNVVSAFTGLKSMAQFPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNE 155
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 145.591 bits (366), Expect = 7.476e-35 Identity = 65/89 (73.03%), Postives = 74/89 (83.15%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 M+VWPP GLKKFETLSYLPPL+ E LL E++YLL GWIP LEFE++ G+VYREH SPGYYDGRYWTMWKLPM+G TD QV+ EV E Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEE 89
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 6.328e-34 Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 1 Query: 106 TSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 T +NG RV CM+VW P KFETLSYLPPLS +AL K+I Y+++SGW PC+EF+++ G V RE + PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E Sbjct: 47 TKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEE 146
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 8.006e-29 Identity = 53/74 (71.62%), Postives = 66/74 (89.19%), Query Frame = 1 Query: 187 SYLPPLSDEALLKEISYLLRSGWIPCLEFELEKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 +YLPPLS EALLK++ YL+RS W+PCLEF + G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQV+ EV E Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEE 73
BLAST of CX287640 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.937e-24 Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISE 229 HSP 2 Score: 109.383 bits (272), Expect = 5.937e-24 Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISE 373 HSP 3 Score: 109.383 bits (272), Expect = 5.937e-24 Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISE 660 HSP 4 Score: 109.383 bits (272), Expect = 5.937e-24 Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISE 803 HSP 5 Score: 109.383 bits (272), Expect = 5.937e-24 Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISE 948 HSP 6 Score: 109.383 bits (272), Expect = 5.937e-24 Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISE 1091 HSP 7 Score: 109.383 bits (272), Expect = 5.937e-24 Identity = 50/95 (52.63%), Postives = 65/95 (68.42%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISE 1235 HSP 8 Score: 107.457 bits (267), Expect = 2.256e-23 Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 1 Query: 142 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLLRSGWIPCLEFEL-EKGWVYREHH-----SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGE 408 MKVW P KKFET SYLPPLSD + K++ ++ G PCLEF E ++ ++ ++ GYYD YWTMWKLPM+GCTDA+QVL+E+ E Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISE 516 The following BLAST results are available for this feature:
BLAST of CX287640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >CX287640 ID=CX287640; Name=CX287640; organism=Citrus clementina; type=EST; length=410bpback to top |