CX288497

Overview
NameCX288497
Unique NameCX288497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig129 contig Ccv1_Contig129:1..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.928e-39
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 2
Query:    2 KNSLATS-SKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN+LA S SK   E  G A    L VKVSMDGAPYLRKVDLK YS Y++LS ALEKMFSCF  GQ G   +  R+ L+     D L   E+VLTYEDKD DWMLVGD+PW++F   C++L+IM+ +DA G+APR++E+
Sbjct:  129 KNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 266          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.928e-39
Identity = 79/138 (57.25%), Postives = 98/138 (71.01%), Query Frame = 2
Query:    2 KNSLATS-SKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN+LA S SK   E  G A    L VKVSMDGAPYLRKVDLK YS Y++LS ALEKMFSCF  GQ G   +  R+ L+     D L   E+VLTYEDKD DWMLVGD+PW++F   C++L+IM+ +DA G+APR++E+
Sbjct:  130 KNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 267          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.446e-38
Identity = 74/118 (62.71%), Postives = 94/118 (79.66%), Query Frame = 2
Query:   62 SALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 415
            +A  VKVSMDGAPYLRK+DL+ Y  Y ELS+AL  MFS FT+G++G    +  + ++E KL DL++  ++V +YEDKDGDWMLVGDVPW MF+ TCKRLR+MK +DAIGLAPRA+EKC
Sbjct:  109 AAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKHGGEEGM-IDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKC 225          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.194e-38
Identity = 85/139 (61.15%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    2 KNSLATSS--KNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN++AT+    + ++ + K G   L VKVSMDGAPYLRKVDLK Y  Y++LS+ALEKMF  FT G+ G         LSES+ KD     E+VLTYEDKDGDWMLVGDVPWEMF  +C+RLRIMK +DAIGLAPRAV+K
Sbjct:  128 KNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGKDG---------LSESR-KD----GEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDK 252          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.704e-37
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 2
Query:   62 SALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 415
            +A LVKVSMDGAPYLRK+D+  Y  Y ELS A + MF+ FTIG+ GSH    +++   +KL+D L   E+V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++AIGLAPRAVEKC
Sbjct:  121 AAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSH----QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKC 231          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.028e-36
Identity = 81/139 (58.27%), Postives = 96/139 (69.06%), Query Frame = 2
Query:    2 KNSLATSS--KNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN++AT+    N ++VD K G   L VKVSMDGAPYLRKVDLK Y  Y+++S  LEKMF  F+ G+ G+              KD     E+VLTYEDKDGDWMLVGDVPWEMF  +C+RLRIMK +DAIGLAPRA EK
Sbjct:  135 KNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGKEGAENQ-----------KD----GEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEK 258          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.176e-32
Identity = 73/137 (53.28%), Postives = 91/137 (66.42%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            K   A   +     +    +S+  VKVSMDGAPYLRKVDLK Y+ Y++LS AL+KMF  FT        A G  M       + ++GS+ V TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK ++AIGLAPRA +K
Sbjct:  110 KEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT--------ATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDK 231          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.176e-32
Identity = 73/137 (53.28%), Postives = 91/137 (66.42%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            K   A   +     +    +S+  VKVSMDGAPYLRKVDLK Y+ Y++LS AL+KMF  FT        A G  M       + ++GS+ V TYEDKDGDWMLVGDVPW+MF+ +CKRLRIMK ++AIGLAPRA +K
Sbjct:  110 KEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT--------ATGNNM-------NEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDK 231          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 8.426e-31
Identity = 68/121 (56.20%), Postives = 88/121 (72.73%), Query Frame = 2
Query:   50 KAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALE-KMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVE 409
            K   +A  VKV++DGAPYLRKVDL+ YS Y +L  AL+ K FS FTI ++            E KL D ++G+E+V TYEDKDGDWMLVGDVPW+MF+ TC+RLR+MKS++A+ LAPRA +
Sbjct:   88 KNALAAKFVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD---------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 67/118 (56.78%), Postives = 87/118 (73.73%), Query Frame = 2
Query:   53 AGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALE-KMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRA 403
            + S A  VKV++DGAPYLRKVDL+ Y  Y +L +AL+ K FS FTI + G+          E KL D + G+E+V TYEDKDGDWMLVGDVPW+MF+ TC+RLR+MKS++A+ LAPR+
Sbjct:  103 SSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKLGNE---------EMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
The following BLAST results are available for this feature:
BLAST of CX288497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA5_ORYSJ4.928e-3957.25Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI4.928e-3957.25Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA17_ARATH2.446e-3862.71Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA17_ORYSJ3.194e-3861.15Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA11_ORYSJ2.704e-3765.25Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA3_ORYSJ1.028e-3658.27Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA13_ORYSJ1.176e-3253.28Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI1.176e-3253.28Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA1_ORYSJ8.426e-3156.20Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]
IAA15_ORYSJ2.452e-3056.78Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC02001A12SK IF1 Citrus clementina cDNA clone C02001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288497 ID=CX288497; Name=CX288497; organism=Citrus clementina; type=EST; length=575bp
GAAGAATTCATTGGCCACTTCGTCTAAGAATAATGATGAAGTAGATGGAA
AAGCAGGTTCCAGTGCTCTGCTTGTTAAGGTCAGCATGGATGGTGCTCCT
TATTTAAGAAAAGTGGACTTGAAAAATTACTCTAAATATCAGGAACTATC
TTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACAATTGGGCAATATGGAT
CTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGCAAGTTGAAGGAT
CTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGACAAAGATGGGGA
TTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGGTACATGCA
AGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGG
GCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTT
GGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAA
ATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTT
CTGTGTTACCACATTACTACGTTTA
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