CX288505

Overview
NameCX288505
Unique NameCX288505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13314 contig Ccv1_Contig13314:889..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.040e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 348
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 348
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 348
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.359e-15
Identity = 40/85 (47.06%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 348
            P+TA  + LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  544 PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.775e-15
Identity = 43/93 (46.24%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 372
            P+TA  + LA A P++Q+ +LGE +YP++ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   A + A  SL
Sbjct:  541 PLTA--SLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKENAQKSAQPSL 628          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.318e-15
Identity = 42/90 (46.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 363
            P+TA  + LA A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++    QA   A ++ S
Sbjct:  542 PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQA---HQAKEAAQKVVS 626          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 3.953e-15
Identity = 39/81 (48.15%), Postives = 62/81 (76.54%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 336
            P+TA  + LA A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++   ++A
Sbjct:  542 PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 620          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.744e-15
Identity = 37/83 (44.58%), Postives = 62/83 (74.70%), Query Frame = 1
Query:  100 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 348
            T  ++ LA+A P++Q+ +LGE L+PL++ +    A K+TGMLLE+D +E+L++LESPE+L++KV EA+ VL++   ++A   A
Sbjct:  539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKEATQKA 621          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 372
            P+TA  + LA A  ++Q+ +LGE +YPL+ ++    A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++    QA   A + A  SL
Sbjct:  541 PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.563e-14
Identity = 50/127 (39.37%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   37 PVDMGAGIPRRDASVGQPMPITA---LSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL---------RSVAQQQANNPADQLASLSLNEN 381
            P   G G     A  G+P    A    + AL+ A P QQ+ +LGE+LYP ++  + + A K+TGMLLEM+ TE+L LLE  EAL+AKV EA+ V           S A  +A  P +     S  EN
Sbjct:  637 PGQGGRGQNAAQAPAGRPEEAVAGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALRAKVDEALNVYDEYMKNKGGESEATGEAAKPKEAAKETSTEEN 763          
The following BLAST results are available for this feature:
BLAST of CX288505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PABP1_MOUSE1.040e-1547.06Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_PONAB1.359e-1547.06Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN1.359e-1547.06Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN1.359e-1547.06Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
EPABA_XENLA1.775e-1546.24Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABPB_XENLA2.318e-1546.67Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABPA_XENLA3.953e-1548.15Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP3_HUMAN6.744e-1544.58Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPABB_XENLA1.962e-1446.24Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_ASPOR2.563e-1439.37Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC02001B09SK IF1 Citrus clementina cDNA clone C02001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288505 ID=CX288505; Name=CX288505; organism=Citrus clementina; type=EST; length=467bp
CCCTTTGACATGGGTGCTGGCAGTATGCTCCCTGTTCCCGTTGACATGGG
TGCTGGCATACCTCGGCGAGATGCGTCTGTTGGACAACCTATGCCGATAA
CGGCTTTGTCTACTGCTCTTGCAAATGCATCACCAGAACAGCAAAGGACG
CTGCTGGGTGAAAGTTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATGC
AGCGGCTAAGGTAACGGGAATGCTCTTGGAGATGGACCAGACAGAGGTTT
TGCATCTTCTTGAGTCACCAGAGGCTTTGAAGGCGAAAGTAGCTGAGGCA
ATGGAGGTTTTGAGGAGTGTTGCTCAGCAGCAGGCTAATAATCCAGCAGA
TCAACTGGCTTCATTGTCCCTGAATGAAAACCTTGTTTCTTGAGCGCGTT
GCTGTCATTGAAGAAGTTTGGATTAGTTGTGGTTTCAAACAATTAAAGTC
TTTGTTTTTGGCATGGA
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