CX288505

Overview
NameCX288505
Unique NameCX288505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length467
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13314 contig Ccv1_Contig13314:889..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_ASPCL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus clavatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.169e-13
Identity = 44/104 (42.31%), Postives = 63/104 (60.58%), Query Frame = 1
Query:   49 GAGIPRRDASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANN--PAD 351
            G     + A+  +  P  AL+  AL  A+P QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  +AL+AKV EA+ V     + +     PAD
Sbjct:  633 GQNAAAQPAAGREEAPAGALTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALRAKVDEALSVYDEYMKNKGEGEAPAD 736          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   73 ASVGQPMPITALST-ALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 309
            A  G+  P   L+  +LA A   QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V
Sbjct:  639 AGRGEEAPAAGLTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALRAKVDEALSV 718          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.833e-13
Identity = 58/165 (35.15%), Postives = 76/165 (46.06%), Query Frame = 1
Query:    4 FDMGAGSMLPVP-VDMGAGI-----------------PRRDASVGQP-----------MPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL--------RSVAQQQANNPADQLASLSLNEN 381
            F  GAG    VP + MG GI                 PR     GQP           +P T   TA  L+   P QQ+ +LGE+LYP ++  + + A K+TGMLLEMD  E+L LLE  EAL+AKV EA+ V            A  ++  P +  A  +  EN
Sbjct:  587 FGRGAGGRGQVPGMPMGQGIRGPGYGQGRGGAPVQGGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALRAKVDEALSVYDEYMKNKGEGEAPAESAKPKEDAAETATEEN 751          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.312e-13
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   55 GIPRRDASVGQP-----------MPITALSTA--LANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 309
            G PR     GQP           +P T   TA  L    P QQ+ +LGE+LYP ++  + + A K+TGMLLEMD TE+L LLE  EAL+AKV EA+ V
Sbjct:  620 GGPRPQGGRGQPAAAPPAAGREEVPATGGLTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALRAKVDEALSV 717          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.243e-13
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   52 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 363
            AG P      G P  +     A+A+ +P QQ+ +LGE+++P ++ +  + A K+TGMLLEMD TE++ L+E+  AL++KV EA+ V     +QQ +    Q  S
Sbjct:  651 AGAPAGARGAGAPEGLQGQLAAVAD-NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDGEGAQAPS 753          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.406e-12
Identity = 44/129 (34.11%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   34 VPVDMGAGIPRRDASVGQPMPITALSTALANASPE-------------QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNEN 381
            +PV  G G P + A  GQ  P  A+     NASP              QQ+ +LGE++YP ++  + + A K+TGMLLEMD  E+L L++   ALKAKV EA+ V     + +  +  +  A  + +++
Sbjct:  630 MPVQQGMGRPGQ-AGRGQGAPAQAVGQRDENASPNGLTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALKAKVDEALTVYDEYVKNKGGDSGEPAADANKSKD 757          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.836e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  109 STALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 333
            S   A  +P+QQ+ +LGE+L+P ++ L+ D A K+TGMLLEMD  E+++LLE   AL AKV EAM V     + Q
Sbjct:  681 SQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALVAKVNEAMAVYDEYVKSQ 755          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.398e-12
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:   94 PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 318
            P+TA  + LA A   +Q+ ++GE LYPL+  +    A K+TGMLLE+D +E+L +LESPE+L AK+ EA+ VL++
Sbjct:  530 PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQA 602          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.091e-12
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1
Query:   25 MLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 318
            MLP+  D       R    G+ M  +           E Q  LLGE L+PLVE+LE   A K+TGMLLEMD++E+L LL+SPE L  +V EA EVL+S
Sbjct:  488 MLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQ--LLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583          
BLAST of CX288505 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 6.979e-12
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  112 TALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 309
            + L+ A+P QQ+ +LGE+LYP + +++ + A K+TGMLLEMD +E+++L     AL+AKV EAM V
Sbjct:  653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKVDEAMSV 718          
The following BLAST results are available for this feature:
BLAST of CX288505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PABP_ASPCL2.169e-1342.31Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPTN2.833e-1350.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU2.833e-1335.15Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_NEOFI6.312e-1345.92Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR8.243e-1337.50Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_COCIM1.406e-1234.11Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CHAGB1.836e-1248.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1L_HUMAN2.398e-1248.00Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABPX_ARATH4.091e-1245.92Probable polyadenylate-binding protein At2g36660 O... [more]
PABP_PHANO6.979e-1248.48Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC02001B09SK IF1 Citrus clementina cDNA clone C02001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288505 ID=CX288505; Name=CX288505; organism=Citrus clementina; type=EST; length=467bp
CCCTTTGACATGGGTGCTGGCAGTATGCTCCCTGTTCCCGTTGACATGGG
TGCTGGCATACCTCGGCGAGATGCGTCTGTTGGACAACCTATGCCGATAA
CGGCTTTGTCTACTGCTCTTGCAAATGCATCACCAGAACAGCAAAGGACG
CTGCTGGGTGAAAGTTTATATCCTCTAGTGGAGCAGCTGGAGCGAGATGC
AGCGGCTAAGGTAACGGGAATGCTCTTGGAGATGGACCAGACAGAGGTTT
TGCATCTTCTTGAGTCACCAGAGGCTTTGAAGGCGAAAGTAGCTGAGGCA
ATGGAGGTTTTGAGGAGTGTTGCTCAGCAGCAGGCTAATAATCCAGCAGA
TCAACTGGCTTCATTGTCCCTGAATGAAAACCTTGTTTCTTGAGCGCGTT
GCTGTCATTGAAGAAGTTTGGATTAGTTGTGGTTTCAAACAATTAAAGTC
TTTGTTTTTGGCATGGA
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