CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+ R R L
Sbjct:  158 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RHORT (NADH-quinone oxidoreductase subunit B OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.149e-20
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLY 153
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EALLYG+LQLQKK+ R   LY
Sbjct:  134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALLYGVLQLQKKIKRTGALY 184          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Mus musculus GN=Ndufs7 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.501e-20
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ+K+ R + L
Sbjct:  169 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKL 218          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ORITI (NADH-quinone oxidoreductase subunit B OS=Orientia tsutsugamushi (strain Ikeda) GN=nuoB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.960e-20
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYHYSYSVVRGCD+IVPVDIYVPGCPPT EALLYGILQLQKK+NR + + +
Sbjct:  118 GYYHYSYSVVRGCDKIVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVKF 169          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ORITB (NADH-quinone oxidoreductase subunit B OS=Orientia tsutsugamushi (strain Boryong) GN=nuoB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.960e-20
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYHYSYSVVRGCD+IVPVDIYVPGCPPT EALLYGILQLQKK+NR + + +
Sbjct:  118 GYYHYSYSVVRGCDKIVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVKF 169          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_MAGSM (NADH-quinone oxidoreductase subunit B OS=Magnetococcus sp. (strain MC-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.960e-20
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLY 153
            GYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA++YGI+QLQKK+NR   +Y
Sbjct:  110 GYYHYSYSVVRGCDRILPVDVYIPGCPPTAEAVMYGIMQLQKKINREGQVY 160          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_CAEEL (Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Caenorhabditis elegans GN=W10D5.2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.960e-20
Identity = 40/49 (81.63%), Postives = 48/49 (97.96%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 147
            GYYHY+YSV+RGCDR++PVDIYVPGCPPTAEALLYG+LQLQKK+ R+R+
Sbjct:  144 GYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKRE 192          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_MARMM (NADH-quinone oxidoreductase subunit B OS=Maricaulis maris (strain MCS10) GN=nuoB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.367e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R
Sbjct:  137 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRR 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_JANSC (NADH-quinone oxidoreductase subunit B OS=Jannaschia sp. (strain CCS1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.367e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ+K+ R
Sbjct:  126 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRR 171          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHOSK (NADH-quinone oxidoreductase subunit B 1 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.367e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ+K+ R
Sbjct:  123 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRR 168          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NDUS7_GORGO8.799e-2188.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_RHORT1.149e-2086.27NADH-quinone oxidoreductase subunit B OS=Rhodospir... [more]
NDUS7_MOUSE1.501e-2088.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_ORITI1.960e-2082.69NADH-quinone oxidoreductase subunit B OS=Orientia ... [more]
NUOB_ORITB1.960e-2082.69NADH-quinone oxidoreductase subunit B OS=Orientia ... [more]
NUOB_MAGSM1.960e-2078.43NADH-quinone oxidoreductase subunit B OS=Magnetoco... [more]
NDUS7_CAEEL1.960e-2081.63Probable NADH dehydrogenase [ubiquinone] iron-sulf... [more]
NUOB_MARMM4.367e-2093.48NADH-quinone oxidoreductase subunit B OS=Maricauli... [more]
NUOB_JANSC4.367e-2093.48NADH-quinone oxidoreductase subunit B OS=Jannaschi... [more]
NUOB1_RHOSK4.367e-2093.48NADH-quinone oxidoreductase subunit B 1 OS=Rhodoba... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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