CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHOS4 (NADH-quinone oxidoreductase subunit B 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.367e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ+K+ R
Sbjct:  123 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRR 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_RHOS1 (NADH-quinone oxidoreductase subunit B 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.367e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ+K+ R
Sbjct:  125 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRR 170          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NDUS7_DICDI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Dictyostelium discoideum GN=ndufs7 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.703e-20
Identity = 40/50 (80.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGILQLQKK+ R ++L
Sbjct:  123 GYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNL 172          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_SPHWW (NADH-quinone oxidoreductase subunit B OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.448e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQ+K+ R
Sbjct:  136 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRR 181          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_SILPO (NADH-quinone oxidoreductase subunit B OS=Silicibacter pomeroyi GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 7.448e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQ+K+ R
Sbjct:  126 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRR 171          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFT (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XYLF2 (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M23) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANOR (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANOP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  131 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 180          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANOM (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB1_RHOS44.367e-2093.48NADH-quinone oxidoreductase subunit B 1 OS=Rhodoba... [more]
NUOB1_RHOS14.367e-2093.48NADH-quinone oxidoreductase subunit B 1 OS=Rhodoba... [more]
NDUS7_DICDI5.703e-2080.00NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_SPHWW7.448e-2091.30NADH-quinone oxidoreductase subunit B OS=Sphingomo... [more]
NUOB_SILPO7.448e-2091.30NADH-quinone oxidoreductase subunit B OS=Silicibac... [more]
NUOB_XYLFT9.728e-2084.00NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XYLF29.728e-2084.00NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XANOR9.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOP9.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOM9.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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