CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_AQUAE (NADH-quinone oxidoreductase subunit B OS=Aquifex aeolicus GN=nuoB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.254e-11
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:   16 SYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            +YS ++G DRI+PVD+Y+PGCPPT + L+YGILQLQ+K+  +
Sbjct:  109 TYSTLQGVDRIIPVDVYIPGCPPTPQGLIYGILQLQRKIKEQ 150
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_AMOA5 (NADH-quinone oxidoreductase subunit B OS=Amoebophilus asiaticus (strain 5a2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.254e-11
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    4 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            Y+ + Y VV+G DRI+PVD+YVPGCPP  EAL+ GIL+LQ+K+  +
Sbjct:  111 YWQHGYHVVKGVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIKAK 156
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_AQUAE8.254e-1159.52NADH-quinone oxidoreductase subunit B OS=Aquifex a... [more]
NUOB_AMOA58.254e-1158.70NADH-quinone oxidoreductase subunit B OS=Amoebophi... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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