CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANCP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANCB (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris (strain B100) GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANC8 (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris (strain 8004) GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANC5 (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XANAC (NADH-quinone oxidoreductase subunit B OS=Xanthomonas axonopodis pv. citri GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_SPHAL (NADH-quinone oxidoreductase subunit B OS=Sphingopyxis alaskensis GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG++QLQ+K+ R
Sbjct:  126 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRR 171          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ROSDO (NADH-quinone oxidoreductase subunit B OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ+K+ R
Sbjct:  126 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRR 171          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_PARL1 (NADH-quinone oxidoreductase subunit B OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  140 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILALQKKIRR 185          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_PARDP (NADH-quinone oxidoreductase subunit B OS=Paracoccus denitrificans (strain Pd 1222) GN=nuoB PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ+++ R
Sbjct:  124 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRR 169          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_OCHA4 (NADH-quinone oxidoreductase subunit B OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILMLQKKIRR 187          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_XANCP9.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANCB9.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANC89.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANC59.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANAC9.728e-2086.00NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_SPHAL9.728e-2089.13NADH-quinone oxidoreductase subunit B OS=Sphingopy... [more]
NUOB_ROSDO9.728e-2089.13NADH-quinone oxidoreductase subunit B OS=Roseobact... [more]
NUOB_PARL19.728e-2093.48NADH-quinone oxidoreductase subunit B OS=Parvibacu... [more]
NUOB_PARDP9.728e-2091.30NADH-quinone oxidoreductase subunit B OS=Paracoccu... [more]
NUOB_OCHA49.728e-2091.30NADH-quinone oxidoreductase subunit B OS=Ochrobact... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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