CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_NOVAD (NADH-quinone oxidoreductase subunit B OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG++QLQ+K+ R
Sbjct:  130 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRR 175          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_METPP (NADH-quinone oxidoreductase subunit B OS=Methylibium petroleiphilum (strain PM1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGILQLQ K+ R   +
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQAKIRRENTI 156          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_MAGSA (NADH-quinone oxidoreductase subunit B OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILQLQKK+ R
Sbjct:  135 GYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRR 180          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPL (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Lens) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPH (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPC (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Corby) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPA (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Paris) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 141
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_GRABC (NADH-quinone oxidoreductase subunit B OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+QLQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGIMQLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_ERYLH (NADH-quinone oxidoreductase subunit B OS=Erythrobacter litoralis (strain HTCC2594) GN=nuoB PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG++QLQ+K+ R
Sbjct:  136 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRR 181          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_EHRRW (NADH-quinone oxidoreductase subunit B OS=Ehrlichia ruminantium (strain Welgevonden) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQ+K+NR
Sbjct:  122 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINR 167          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_NOVAD9.728e-2089.13NADH-quinone oxidoreductase subunit B OS=Novosphin... [more]
NUOB_METPP9.728e-2084.00NADH-quinone oxidoreductase subunit B OS=Methylibi... [more]
NUOB_MAGSA9.728e-2091.30NADH-quinone oxidoreductase subunit B OS=Magnetosp... [more]
NUOB_LEGPL9.728e-2087.23NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPH9.728e-2087.23NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPC9.728e-2087.23NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPA9.728e-2087.23NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_GRABC9.728e-2089.13NADH-quinone oxidoreductase subunit B OS=Granuliba... [more]
NUOB_ERYLH9.728e-2089.13NADH-quinone oxidoreductase subunit B OS=Erythroba... [more]
NUOB_EHRRW9.728e-2093.48NADH-quinone oxidoreductase subunit B OS=Ehrlichia... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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