CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_EHRRG (NADH-quinone oxidoreductase subunit B OS=Ehrlichia ruminantium (strain Gardel) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQ+K+NR
Sbjct:  122 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINR 167          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_DINSH (NADH-quinone oxidoreductase subunit B OS=Dinoroseobacter shibae (strain DFL 12) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+LQLQ+K+ R
Sbjct:  126 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGLLQLQRKIRR 171          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_RHOS5 (NADH-quinone oxidoreductase subunit B 2 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ+++ R
Sbjct:  123 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRR 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_NITMU (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.728e-20
Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQ K++R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIHR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFM (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M12) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 42/50 (84.00%), Postives = 47/50 (94.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:  133 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_VEREI (NADH-quinone oxidoreductase subunit B OS=Verminephrobacter eiseniae (strain EF01-2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILQLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_SILST (NADH-quinone oxidoreductase subunit B OS=Silicibacter sp. (strain TM1040) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG++QLQ+K+ R
Sbjct:  123 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRR 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_POLSJ (NADH-quinone oxidoreductase subunit B OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_POLNA (NADH-quinone oxidoreductase subunit B OS=Polaromonas naphthalenivorans (strain CJ2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ+K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQQKIRR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_NITWN (NADH-quinone oxidoreductase subunit B OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  156 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRR 201          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_EHRRG9.728e-2093.48NADH-quinone oxidoreductase subunit B OS=Ehrlichia... [more]
NUOB_DINSH9.728e-2089.13NADH-quinone oxidoreductase subunit B OS=Dinoroseo... [more]
NUOB2_RHOS59.728e-2091.30NADH-quinone oxidoreductase subunit B 2 OS=Rhodoba... [more]
NUOB2_NITMU9.728e-2091.30NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB_XYLFM1.271e-1984.00NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_VEREI1.271e-1989.13NADH-quinone oxidoreductase subunit B OS=Vermineph... [more]
NUOB_SILST1.271e-1989.13NADH-quinone oxidoreductase subunit B OS=Silicibac... [more]
NUOB_POLSJ1.271e-1989.13NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_POLNA1.271e-1989.13NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_NITWN1.271e-1993.48NADH-quinone oxidoreductase subunit B OS=Nitrobact... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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