CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_NITEU (NADH-quinone oxidoreductase subunit B OS=Nitrosomonas europaea GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_MESSB (NADH-quinone oxidoreductase subunit B OS=Mesorhizobium sp. (strain BNC1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  139 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRR 184          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_LEPCP (NADH-quinone oxidoreductase subunit B OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 150
            GYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEALLYGILQLQ K+ R   +
Sbjct:  107 GYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQLQAKIRRENTI 156          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BART1 (NADH-quinone oxidoreductase subunit B OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BARQU (NADH-quinone oxidoreductase subunit B OS=Bartonella quintana GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BARHE (NADH-quinone oxidoreductase subunit B OS=Bartonella henselae GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BARBK (NADH-quinone oxidoreductase subunit B OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=nuoB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_NITOC (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB2_GLUDA (NADH-quinone oxidoreductase subunit B 2 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI QLQKK+ R
Sbjct:  139 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIFQLQKKIRR 184          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_ACICJ (NADH-quinone oxidoreductase subunit B 1 OS=Acidiphilium cryptum (strain JF-5) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 42/51 (82.35%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLY 153
            GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI QLQKK+ R   ++
Sbjct:  134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGITQLQKKIRRTGTIF 184          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_NITEU1.271e-1991.30NADH-quinone oxidoreductase subunit B OS=Nitrosomo... [more]
NUOB_MESSB1.271e-1993.48NADH-quinone oxidoreductase subunit B OS=Mesorhizo... [more]
NUOB_LEPCP1.271e-1982.00NADH-quinone oxidoreductase subunit B OS=Leptothri... [more]
NUOB_BART11.271e-1993.48NADH-quinone oxidoreductase subunit B OS=Bartonell... [more]
NUOB_BARQU1.271e-1993.48NADH-quinone oxidoreductase subunit B OS=Bartonell... [more]
NUOB_BARHE1.271e-1993.48NADH-quinone oxidoreductase subunit B OS=Bartonell... [more]
NUOB_BARBK1.271e-1993.48NADH-quinone oxidoreductase subunit B OS=Bartonell... [more]
NUOB2_NITOC1.271e-1991.30NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB2_GLUDA1.271e-1989.13NADH-quinone oxidoreductase subunit B 2 OS=Glucona... [more]
NUOB1_ACICJ1.271e-1982.35NADH-quinone oxidoreductase subunit B 1 OS=Acidiph... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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