CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11646 contig Ccv1_Contig11646:104..535. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_JANMA (NADH-quinone oxidoreductase subunit B OS=Janthinobacterium sp. (strain Marseille) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQNKIRR 152
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_HYPNA (NADH-quinone oxidoreductase subunit B OS=Hyphomonas neptunium (strain ATCC 15444) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG LQLQKK+ R
Sbjct:  139 GYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALVYGFLQLQKKIRR 184
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_HERAR (NADH-quinone oxidoreductase subunit B OS=Herminiimonas arsenicoxydans GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQNKIRR 152
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUSU (NADH-quinone oxidoreductase subunit B OS=Brucella suis GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUSI (NADH-quinone oxidoreductase subunit B OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUO2 (NADH-quinone oxidoreductase subunit B OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUME (NADH-quinone oxidoreductase subunit B OS=Brucella melitensis GN=nuoB PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUMB (NADH-quinone oxidoreductase subunit B OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUC2 (NADH-quinone oxidoreductase subunit B OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187
[Close]
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUAB (NADH-quinone oxidoreductase subunit B OS=Brucella abortus GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_JANMA1.659e-1989.13NADH-quinone oxidoreductase subunit B OS=Janthinob... [more]
NUOB_HYPNA1.659e-1989.13NADH-quinone oxidoreductase subunit B OS=Hyphomona... [more]
NUOB_HERAR1.659e-1989.13NADH-quinone oxidoreductase subunit B OS=Herminiim... [more]
NUOB_BRUSU1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_BRUSI1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_BRUO21.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_BRUME1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_BRUMB1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_BRUC21.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_BRUAB1.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
back to top