CX288506

Overview
NameCX288506
Unique NameCX288506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUA2 (NADH-quinone oxidoreductase subunit B OS=Brucella abortus (strain 2308) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_BRUA1 (NADH-quinone oxidoreductase subunit B OS=Brucella abortus (strain S19) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYGIL LQKK+ R
Sbjct:  142 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRR 187          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_AZOSE (NADH-quinone oxidoreductase subunit B OS=Azoarcus sp. (strain EbN1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_CHRVO (NADH-quinone oxidoreductase subunit B 1 OS=Chromobacterium violaceum GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB1_AZOSB (NADH-quinone oxidoreductase subunit B 1 OS=Azoarcus sp. (strain BH72) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.659e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:  107 GYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_SINMW (NADH-quinone oxidoreductase subunit B OS=Sinorhizobium medicae (strain WSM419) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 138
            GYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEALLYG+L LQKK+ R
Sbjct:  141 GYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRR 186          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICTY (NADH-quinone oxidoreductase subunit B OS=Rickettsia typhi GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICRS (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICRO (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Iowa) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of CX288506 vs. ExPASy Swiss-Prot
Match: NUOB_RICPU (NADH-quinone oxidoreductase subunit B OS=Rickettsia peacockii (strain Rustic) GN=nuoB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.167e-19
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 156
            GYYH+SYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:  117 GYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
The following BLAST results are available for this feature:
BLAST of CX288506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
NUOB_BRUA21.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_BRUA11.659e-1991.30NADH-quinone oxidoreductase subunit B OS=Brucella ... [more]
NUOB_AZOSE1.659e-1989.13NADH-quinone oxidoreductase subunit B OS=Azoarcus ... [more]
NUOB1_CHRVO1.659e-1989.13NADH-quinone oxidoreductase subunit B 1 OS=Chromob... [more]
NUOB1_AZOSB1.659e-1989.13NADH-quinone oxidoreductase subunit B 1 OS=Azoarcu... [more]
NUOB_SINMW2.167e-1989.13NADH-quinone oxidoreductase subunit B OS=Sinorhizo... [more]
NUOB_RICTY2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICRS2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICRO2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICPU2.167e-1976.92NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC02001B10SK IF1 Citrus clementina cDNA clone C02001B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288506 ID=CX288506; Name=CX288506; organism=Citrus clementina; type=EST; length=432bp
GGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGGATTGT
CCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGCCCTAC
TCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAGATTTG
TATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGCAGTTA
CACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTTGTCTG
ATGAAATGTCCATGTAAAGGGAGAGATTATTTTCAGCTGTTTTAGAACAT
ACGTCCTGAGAAGGGCTTATGTGGTGCTAACACCAATATTTCATGAGTTG
GATCTTTTGTTCTCTGGCCTTGCTACAGCGGATCATGTCCCTGTAAAAAT
TATTTGATAGGCTCGAACATTTGTTTTTGTGT
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