CX288507

Overview
NameCX288507
Unique NameCX288507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14533 contig Ccv1_Contig14533:154..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CCD94_DICDI (Coiled-coil domain-containing protein 94 homolog OS=Dictyostelium discoideum GN=ccdc94 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 40/125 (32.00%), Postives = 65/125 (52.00%), Query Frame = 3
Query:  108 MPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRIS 476
            +P +I C  C   I +G +FNA+K+ V N  Y   KI+ F ++   C  ++ I+TDPKN EYV  SGA R  E +   D E       E+  +  D    LE++  + +++ E    L +I+ ++
Sbjct:   37 LPMSIRCNTCGEYIGRGTKFNAKKETVQNEDYLGIKIYRFFLRCKKCAAELTIKTDPKNSEYVCESGATRNYEPWKETDEEKSNRMTKEQEEE-QDAMIALENRTLESKREMEMLDALEEIKSLN 160          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CCD94_MOUSE (Coiled-coil domain-containing protein 94 OS=Mus musculus GN=Ccdc94 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.935e-11
Identity = 39/138 (28.26%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   93 IIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDY 500
            ++R   PFN+ C  C   I KG +FNA K+ V N  Y    I+ F +K   C  +I  +TDP+N +Y +  GA R  +   + + E   +  + E  +L++P   LE++  D + + E    L +++ ++  +   D+
Sbjct:   32 VVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEAYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDF 169          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CCD94_HUMAN (Coiled-coil domain-containing protein 94 OS=Homo sapiens GN=CCDC94 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.935e-11
Identity = 39/138 (28.26%), Postives = 70/138 (50.72%), Query Frame = 3
Query:   93 IIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGN--YYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDY 500
            ++R   PFN+ C  C   I KG +FNA K+ V N  Y    I+ F +K   C  +I  +TDP+N +Y +  GA R  +   + + E   +  + E  +L++P   LE++  D + + E    L +++ ++  +   D+
Sbjct:   32 VVRLMAPFNMRCKTCGEYIYKGKKFNARKETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKRVQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDF 169          
The following BLAST results are available for this feature:
BLAST of CX288507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD94_DICDI1.135e-1132.00Coiled-coil domain-containing protein 94 homolog O... [more]
CCD94_MOUSE1.935e-1128.26Coiled-coil domain-containing protein 94 OS=Mus mu... [more]
CCD94_HUMAN1.935e-1128.26Coiled-coil domain-containing protein 94 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionC02001B11SK IF1 Citrus clementina cDNA clone C02001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288507 ID=CX288507; Name=CX288507; organism=Citrus clementina; type=EST; length=508bp
CAGAATGGACCCCAAATCAGGGTTCTTTGAACAAGTTTCATGGTCAACAT
GCTTTGAGGGAAAGAGCAAGAAAGTTAGATCAGGGAATTTTGATTATAAG
GTTTGAGATGCCTTTCAATATATGGTGCGGTGGATGCAATTCTATGATTG
CAAAGGGTGTTCGTTTCAATGCTGAAAAGAAGCAAGTGGGAAATTATTAC
TCTACAAAGATATGGAGTTTTACGATGAAGTCTCCGTGCTGCAAACATCA
GATTGTTATCCAGACAGATCCAAAGAATTGTGAGTATGTAATTATTAGTG
GAGCTCAGCGAAAGACAGAGGAGTTTGACGTTGAGGATGCAGAGACTCTT
GAACTCCCTGCAGATGAGGAAAGGGGTAAGCTTTCAGATCCATTTTATCG
TCTTGAGCACCAGGAAGCTGACCTGCAGAAGAAGAAAGAAGCTGAGCCAA
GACTGGTGCAAATTCAGAGAATATCTGATGGCAGGTTTTCAGACGACTAT
GCACTAAA
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