CX288527

Overview
NameCX288527
Unique NameCX288527
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.393e-45
Identity = 86/175 (49.14%), Postives = 121/175 (69.14%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG LK+AA+KAPGFG+R+   L+D+AILTGG V+ +++G+ L+ V  E+LG A KVV+TKD TTIV    +++ +  R+ QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LL  +  +D  K T  N+++K G
Sbjct:  267 LRGGLKVAAVKAPGFGDRRKAMLEDMAILTGGQVVSEDLGIKLENVSLEMLGQAKKVVITKDNTTIVDGAGSKEDIQARIVQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVAGGGVALLYATKALD--KLTAVNEDQKFG 439          

HSP 2 Score: 36.5798 bits (83), Expect = 1.393e-45
Identity = 17/38 (44.74%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  532 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            DIV++AL  P++ IA+NAG +GSV+  K+L      +G
Sbjct:  441 DIVRKALQAPVRQIAQNAGFDGSVIVGKLLEKGETNFG 478          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH601_RHOPS (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB5) GN=groL1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.393e-45
Identity = 86/175 (49.14%), Postives = 118/175 (67.43%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ ++ V  ++LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G
Sbjct:  267 LRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLQMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKRIK--TQNDDQKTG 439          

HSP 2 Score: 40.0466 bits (92), Expect = 1.393e-45
Identity = 19/38 (50.00%), Postives = 26/38 (68.42%), Query Frame = 1
Query:  532 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            +IV++AL  P + IA NAG +GSV+  KVL  D + YG
Sbjct:  441 EIVRKALSAPARQIAINAGEDGSVIVGKVLEKDQYNYG 478          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.393e-45
Identity = 83/140 (59.29%), Postives = 105/140 (75.00%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAA 422
            LRG LKIAA+KAPGFG+R+   L DIAILTGG VI +++G+ L+ V  ++LG A K+ +TKD TTIV     +  +  RVAQIR  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DALNAT+AA
Sbjct:  267 LRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLESVTMDMLGTAKKIQITKDETTIVDGAGEKAEIEARVAQIRAQIEETTSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAA 406          

HSP 2 Score: 40.4318 bits (93), Expect = 1.393e-45
Identity = 19/37 (51.35%), Postives = 29/37 (78.38%), Query Frame = 1
Query:  535 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            IV+RAL  PL+ IA+NAGV+G+VV+ K+  S++  +G
Sbjct:  442 IVRRALEAPLRQIAENAGVDGAVVAGKIRESEDKNFG 478          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH601_RHOPB (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain BisB18) GN=groL1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.393e-45
Identity = 86/175 (49.14%), Postives = 117/175 (66.86%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG LK+AA+KAPGFG+R+   L DIAILTGG  I +++G+ ++ V   +LG A KV++ K+ TTIV     +  +  RVAQI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KE+K RV+DA++AT+AA            LLR S ++  IK    ND++K G
Sbjct:  267 LRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKMENVTLAMLGKAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEIEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKRIK--TQNDDQKTG 439          

HSP 2 Score: 41.2022 bits (95), Expect = 1.393e-45
Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  532 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            +IV++AL +P + IA NAG +GSV+  K+L  D + YG
Sbjct:  441 EIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYSYG 478          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH60_THET8 (60 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groL PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.393e-45
Identity = 88/171 (51.46%), Postives = 116/171 (67.84%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 515
            LRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G  L+     +LG A +V +TKD TTIVG    ++ +  R+  I+  +E  + +Y REKL ER+AKL+GGVAVI+VGA TETELKEKK R EDALNAT+AA           TLLR  S V+ + + L+ DE
Sbjct:  265 LRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDE 435          

HSP 2 Score: 37.3502 bits (85), Expect = 1.393e-45
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  517 KRLEAD------IVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKYG 645
            K+LE D      IV+RAL  P + IA+NAG  GSV+ +++L+ + N +YG
Sbjct:  429 KKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYG 478          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH60_THET2 (60 kDa chaperonin OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=groL PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.393e-45
Identity = 88/171 (51.46%), Postives = 116/171 (67.84%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDE 515
            LRG L +AA+KAPGFG+R+ + L DIA +TGGTVI +E+G  L+     +LG A +V +TKD TTIVG    ++ +  R+  I+  +E  + +Y REKL ER+AKL+GGVAVI+VGA TETELKEKK R EDALNAT+AA           TLLR  S V+ + + L+ DE
Sbjct:  265 LRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDE 435          

HSP 2 Score: 37.3502 bits (85), Expect = 1.393e-45
Identity = 22/50 (44.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:  517 KRLEAD------IVKRALCYPLKLIAKNAGVNGSVVSEKVLS-SDNHKYG 645
            K+LE D      IV+RAL  P + IA+NAG  GSV+ +++L+ + N +YG
Sbjct:  429 KKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYG 478          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH60_CAMHC (60 kDa chaperonin OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=groL PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.393e-45
Identity = 91/175 (52.00%), Postives = 117/175 (66.86%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG L I+A+KAPGFG+R+   L+DIAILTGGTVI +E+G  L+      LG A ++++ KD TTIV     +D +  RV QI+  I     DY+REKL ER+AKLSGGVAVI+VGA TETE+KEKK RV+DAL+ATKAA            L++     +A+KE L  D EK+G
Sbjct:  266 LRGVLNISAVKAPGFGDRRKAMLEDIAILTGGTVISEELGRTLESASIADLGKAERILIDKDNTTIVNGAGKKDDIKARVDQIKAQIAVTSSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAG---NAVKENLKGD-EKIG 436          

HSP 2 Score: 38.891 bits (89), Expect = 1.393e-45
Identity = 19/43 (44.19%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  517 KRLEADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            +++ ADIVKRAL  PL+ IA+NAG +  V++  V  +    YG
Sbjct:  433 EKIGADIVKRALFAPLRQIAENAGFDAGVIANAVSINKEKAYG 475          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH60_PORPU (60 kDa chaperonin, chloroplastic OS=Porphyra purpurea GN=groL PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.394e-45
Identity = 88/172 (51.16%), Postives = 119/172 (69.19%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDA-IKETLDNDE 515
            LRG L + A++APGFG+R+   L+D++ILTGG VI ++ G +LD V  ++LG A +VV+TKD+TTI+ DG  +  V  R  QI+  IE ++  YEREKL ER+AKLSGGVAVI+VGA TETE+K+KKLR+EDA+NATKAA           T + +S ++    K  L  DE
Sbjct:  267 LRGILNVVAVRAPGFGDRRKSLLEDMSILTGGQVITEDAGFSLDTVQLDMLGKARRVVVTKDSTTIIADGH-EATVKSRCEQIKRQIETSDSLYEREKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAIEEGIVPGGGSTNVHISGELFVWAKNNLFEDE 437          

HSP 2 Score: 41.5874 bits (96), Expect = 1.394e-45
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
Query:  535 IVKRALCYPLKLIAKNAGVNGSVVSEKVLSSD 630
            IV+RAL YPL+ IA NAG NG+VV EKV ++D
Sbjct:  443 IVQRALTYPLRRIAFNAGDNGAVVVEKVKTND 474          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH601_RHOP2 (60 kDa chaperonin 1 OS=Rhodopseudomonas palustris (strain HaA2) GN=groL1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.816e-45
Identity = 90/175 (51.43%), Postives = 116/175 (66.29%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            LRG LK++A+KAPGFG+R+   L+DIAILTGG +I +E+G+ L+ V  ++LG A KVV+ K+ TTIVG    +  +  RV QI+  IE    DY+REKL ER+AKL+GGVAVI+VG  TE E+KEKK RVEDALNAT+AA            LLR    V  I    DN + + G
Sbjct:  267 LRGGLKVSAVKAPGFGDRRKAMLEDIAILTGGQLISEEIGIKLESVTLKMLGRAKKVVIDKENTTIVGGAGKKPDIEARVQQIKAQIEETSSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRIHN--DNADVQAG 439          

HSP 2 Score: 36.5798 bits (83), Expect = 1.816e-45
Identity = 17/38 (44.74%), Postives = 27/38 (71.05%), Query Frame = 1
Query:  532 DIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYG 645
            +IV +AL  P++ IA+NAGV GS+V  K+L + +  +G
Sbjct:  441 NIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFG 478          
BLAST of CX288527 vs. ExPASy Swiss-Prot
Match: CH60_PSEMY (60 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.816e-45
Identity = 93/175 (53.14%), Postives = 121/175 (69.14%), Query Frame = 3
Query:    3 LRGALKIAALKAPGFGERKSQYLDDIAILTGGTVIRDEVGLALDKVGKEVLGNASKVVLTKDTTTIVGDGSTQDAVSKRVAQIRTLIENAEQDYEREKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVG 527
            +RG +K+AA+KAPGFG+R+   L DIAILTGGTVI +EVGL+L+    E LGNA +VVL KD TTI+     Q  +  RVAQIR  +E    DY++EKL ER+AKL+GGVAVI+VGA TE E+KEKK RVEDAL+AT+AA            L+R    ++ +K   DN+++ VG
Sbjct:  267 MRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLESATLEHLGNAKRVVLNKDNTTIIDGAGAQADIEARVAQIRKQVEETSSDYDKEKLQERLAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLKG--DNEDQNVG 439          

HSP 2 Score: 25.7942 bits (55), Expect = 1.816e-45
Identity = 13/28 (46.43%), Postives = 19/28 (67.86%), Query Frame = 1
Query:  535 IVKRALCYPLKLIAKNAGVNGSVVSEKV 618
            +++RA+  PL+ I  NAG   SVV +KV
Sbjct:  442 LLRRAVEAPLRQIVANAGGEPSVVVDKV 469          
The following BLAST results are available for this feature:
BLAST of CX288527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RHOCS1.393e-4549.1460 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH601_RHOPS1.393e-4549.1460 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_SILST1.393e-4559.2960 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]
CH601_RHOPB1.393e-4549.1460 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_THET81.393e-4551.4660 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH60_THET21.393e-4551.4660 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH60_CAMHC1.393e-4552.0060 kDa chaperonin OS=Campylobacter hominis (strain... [more]
CH60_PORPU1.394e-4551.1660 kDa chaperonin, chloroplastic OS=Porphyra purpu... [more]
CH601_RHOP21.816e-4551.4360 kDa chaperonin 1 OS=Rhodopseudomonas palustris ... [more]
CH60_PSEMY1.816e-4553.1460 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]

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Properties
Property NameValue
Genbank descriptionC02001D10SK IF1 Citrus clementina cDNA clone C02001D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288527 ID=CX288527; Name=CX288527; organism=Citrus clementina; type=EST; length=646bp
AGCTGAGAGGTGCATTGAAGATTGCTGCTCTTAAAGCTCCTGGTTTTGGA
GAGCGCAAGAGCCAGTACCTTGACGACATTGCTATTTTGACTGGAGGAAC
TGTAATCAGAGATGAGGTGGGACTTGCCTTGGACAAAGTTGGCAAGGAGG
TCCTAGGTAATGCTTCTAAAGTTGTGCTCACAAAGGATACCACCACCATT
GTGGGGGATGGCAGCACCCAGGATGCAGTGAGCAAACGAGTGGCGCAAAT
CAGAACTCTAATTGAGAACGCTGAGCAAGACTATGAAAGGGAGAAGCTTA
ATGAAAGAATTGCTAAACTGTCAGGTGGTGTTGCTGTCATACAGGTTGGA
GCTCAAACTGAGACAGAGCTTAAAGAGAAGAAGTTGAGAGTCGAAGATGC
TCTTAATGCAACAAAGGCTGCAGTTGAGGAAGGTATCGTAGTTGGTGGCG
GATGTACTCTACTGAGACTCTCATCTAAGGTGGATGCCATTAAGGAAACC
CTTGATAATGATGAAGAAAAGGTTGGAGGCAGATATTGTTAAAAGAGCTC
TGTGCTACCCACTGAAATTAATTGCCAAAAATGCCGGTGTTAATGGAAGT
GTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGAT
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