CX288571

Overview
NameCX288571
Unique NameCX288571
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            AFY G   + + + L L    E  ++L  G  D+D+  L+++T+Y G Y++   TIK FW+VV GF    +  LL F T   R P+ G   L  +F I K    ++            LP A TC+N L LP YK    LK KL+  IS++ GF L
Sbjct:  635 AFYYGFHSVCASNALMLLRPEEV-EILVCGSPDLDMHALQRSTQYDG-YAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL--NFKISKNETSTNC-----------LPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGL 775          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.005e-14
Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 1
Query:   10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDI-DVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYA 453
            ++F  G   +   S L+ F   E +QLL G + D  D   L +  R   GY+  SR +K  +E++  F+ +++ + L+FVT   R P+ GF+ L P  TI +   +S+          + LPS  TC N LKLP Y     ++ KLL A
Sbjct: 1839 DSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFEST------ENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIA 1981          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.694e-14
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480
            AFY G   + + + L L    E  ++L  G  ++D+  L+++T+Y G Y++   TI+ FW+VV GF  + +  LL F T   R P+ G   L  +F I K    ++ W          LP A TC+N L LP YK    LK KL+  IS++ GF L
Sbjct:  633 AFYCGFHSVCASNALMLLRPEEV-EILVCGSPELDMHALQRSTQYDG-YAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADL--NFKISKNETSTN-W----------LPVAHTCFNQLCLPPYKSRKDLKQKLIIGISNSEGFGL 773          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13
Identity = 51/159 (32.08%), Postives = 77/159 (48.43%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTI-HKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAG-FELS 483
            AF  G   + S   L++FN  E   +L G      ++++  + ++  GY+  S  ++   +++  F+ +++   L+FVT   R P  G   L P  TI  K   DSS        D + LPS  TC N LKLP Y     +K KL+YAI+   G F LS
Sbjct: 1353 AFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHGSDSS--------DTD-LPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483
            AF  G   +     L+LF  SE   ++ G  +  + ++L +   Y G YS    T+KLFWE    F  +++   L F+T   R P+ G   LQ    I   A              E LP A TCYN L LP Y     L A+L  A+ +  GF L+
Sbjct:  908 AFSSGFLKVCGGKVLELFQPSELRAMMVGNSN-YNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQ--IVIQSTASGE-----------EYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFSLA 1050          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 53/162 (32.72%), Postives = 75/162 (46.30%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVER----LPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAG-FELS 483
            AF  G   +   + L++F  SE + LL G R   +V+ L ++ ++  GY+  S  I    E++      ++    +FVT   R P  G   L P  TI +    +S  A  G    E     LPS  TC N LKLP Y     +  KLLYAI+   G F+LS
Sbjct: 1727 AFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTSSAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12
Identity = 50/149 (33.56%), Postives = 71/149 (47.65%), Query Frame = 1
Query:   16 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGG-YSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 459
            F +GL +L+  + L +F+ +E  +LL  G  DI+V D + +    GG +    + ++ FW VV     +E   LL+F T  S+ P  GF  L PSF I            I       LP+A TC+N L LPTY     +   L  AIS
Sbjct:  679 FLKGLNELVPENLLAIFDENEL-ELLMCGTGDINVSDFKAHAVVVGGSWHFREKVMRWFWAVVSSLTQEELARLLQFTTGSSQLPPGGFAALCPSFQI------------IAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAIS 814          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 50/149 (33.56%), Postives = 70/149 (46.98%), Query Frame = 1
Query:   16 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGG-YSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 459
            F +GL +L+  + L +F+ +E  +LL  G  DI V D + +    GG +    + ++ FW VV     +E   LL+F T  S+ P  GF  L PSF I            I       LP+A TC+N L LPTY     +   L  AIS
Sbjct:  679 FLKGLNELVPENLLAIFDENEL-ELLMCGTGDISVSDFKAHAVVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPPGGFAALCPSFQI------------IAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAIS 814          
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 46/153 (30.07%), Postives = 66/153 (43.14%), Query Frame = 1
Query:   13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAG 471
            AF  G + + S   + +    E   +      D  +  L  N     GY+  S  I  F  ++  F   ER + L+F+T   + P+ GFK L P FT+     +  L A       E LPS  TC N LKLP Y     ++++L  AI   AG
Sbjct: 1332 AFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKHAEDGLTA------DEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAG 1478          
The following BLAST results are available for this feature:
BLAST of CX288571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
HECD2_HUMAN1.349e-1435.90Probable E3 ubiquitin-protein ligase HECTD2 OS=Hom... [more]
TRIPC_HUMAN3.005e-1432.89Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
HECD2_MOUSE6.694e-1435.26Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus... [more]
UPL4_ARATH1.142e-1332.08E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
HERC3_HUMAN4.339e-1331.85Probable E3 ubiquitin-protein ligase HERC3 OS=Homo... [more]
UPL3_ARATH1.649e-1232.72E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
K0317_MOUSE2.812e-1233.56Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 ... [more]
K0317_HUMAN3.673e-1233.56Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 ... [more]
UFD4_YEAST1.396e-1130.07Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC02001H07SK IF1 Citrus clementina cDNA clone C02001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288571 ID=CX288571; Name=CX288571; organism=Citrus clementina; type=EST; length=630bp
CCCTTCTCAAATGCATTTTACAGAGGTTTAACTGATCTCATATCACCATC
TTGGTTGAAGTTATTTAATGCAAGTGAATTCAATCAGTTACTTTCAGGAG
GAAGACATGACATTGATGTAGATGATTTGAGAAAAAATACACGGTATACC
GGTGGCTATTCTGAAGGGAGTCGAACAATTAAACTCTTTTGGGAGGTTGT
TGAAGGATTTGAACCAAAAGAACGATGTATGCTGCTTAAATTTGTGACAA
GTTGCTCTCGAGCTCCATTGCTTGGATTCAAACACTTGCAGCCATCTTTT
ACAATTCACAAGGTTGCATGTGATTCGTCGCTTTGGGCAGTCATTGGCGG
ACAGGATGTAGAACGGCTTCCGTCGGCTTCTACATGCTACAATACTCTCA
AGCTTCCTACATACAAGCGTTCAAGCACTTTGAAAGCAAAACTTCTTTAT
GCAATCAGTTCCAATGCTGGGTTTGAACTTTCTTAGGGATCTGACTATTT
CTGCTTCAGGTGAATGAATTTGTCATGCACTTCTTGTCCCTGAATCCTTA
CTTCTACTCTCAACTGAAAACGCTTCTGATTGCTACTGATCGCAAAGACT
GTAAAAAAAAAAAAATCTGTCATGTGGAAT
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