CX288571
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECD2_HUMAN (Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14 Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480 AFY G + + + L L E ++L G D+D+ L+++T+Y G Y++ TIK FW+VV GF + LL F T R P+ G L +F I K ++ LP A TC+N L LP YK LK KL+ IS++ GF L Sbjct: 635 AFYYGFHSVCASNALMLLRPEEV-EILVCGSPDLDMHALQRSTQYDG-YAKTDLTIKYFWDVVLGFPLDLQKKLLHFTTGSDRVPVGGMADL--NFKISKNETSTNC-----------LPVAHTCFNQLCLPPYKSKKDLKQKLIIGISNSEGFGL 775
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.005e-14 Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 1 Query: 10 NAFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDI-DVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYA 453 ++F G + S L+ F E +QLL G + D D L + R GY+ SR +K +E++ F+ +++ + L+FVT R P+ GF+ L P TI + +S+ + LPS TC N LKLP Y ++ KLL A Sbjct: 1839 DSFRDGFESVFPLSHLQYFYPEELDQLLCGSKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFEST------ENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIA 1981
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HECD2_MOUSE (Probable E3 ubiquitin-protein ligase HECTD2 OS=Mus musculus GN=Hectd2 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.694e-14 Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFEL 480 AFY G + + + L L E ++L G ++D+ L+++T+Y G Y++ TI+ FW+VV GF + + LL F T R P+ G L +F I K ++ W LP A TC+N L LP YK LK KL+ IS++ GF L Sbjct: 633 AFYCGFHSVCASNALMLLRPEEV-EILVCGSPELDMHALQRSTQYDG-YAKTDLTIRYFWDVVLGFPLELQKKLLHFTTGSDRVPVGGMADL--NFKISKNETSTN-W----------LPVAHTCFNQLCLPPYKSRKDLKQKLIIGISNSEGFGL 773
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.142e-13 Identity = 51/159 (32.08%), Postives = 77/159 (48.43%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTI-HKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAG-FELS 483 AF G + S L++FN E +L G ++++ + ++ GY+ S ++ +++ F+ +++ L+FVT R P G L P TI K DSS D + LPS TC N LKLP Y +K KL+YAI+ G F LS Sbjct: 1353 AFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDHIKFDHGYTSSSPPVEYLLQILHEFDREQQRAFLQFVTGSPRLPHGGLASLSPKLTIVRKHGSDSS--------DTD-LPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: HERC3_HUMAN (Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13 Identity = 50/157 (31.85%), Postives = 69/157 (43.95%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAGFELS 483 AF G + L+LF SE ++ G + + ++L + Y G YS T+KLFWE F +++ L F+T R P+ G LQ I A E LP A TCYN L LP Y L A+L A+ + GF L+ Sbjct: 908 AFSSGFLKVCGGKVLELFQPSELRAMMVGNSN-YNWEELEETAIYKGDYSATHPTVKLFWETFHEFPLEKKKKFLLFLTGSDRIPIYGMASLQ--IVIQSTASGE-----------EYLPVAHTCYNLLDLPKYSSKEILSARLTQALDNYEGFSLA 1050
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12 Identity = 53/162 (32.72%), Postives = 75/162 (46.30%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVER----LPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAG-FELS 483 AF G + + L++F SE + LL G R +V+ L ++ ++ GY+ S I E++ ++ +FVT R P G L P TI + +S A G E LPS TC N LKLP Y + KLLYAI+ G F+LS Sbjct: 1727 AFRSGFNQVFDITSLQIFTPSELDYLLCGRRELWEVETLAEHIKFDHGYNAKSPAIINLLEIMGELTADQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTSSAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: K0317_MOUSE (Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 2.812e-12 Identity = 50/149 (33.56%), Postives = 71/149 (47.65%), Query Frame = 1 Query: 16 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGG-YSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 459 F +GL +L+ + L +F+ +E +LL G DI+V D + + GG + + ++ FW VV +E LL+F T S+ P GF L PSF I I LP+A TC+N L LPTY + L AIS Sbjct: 679 FLKGLNELVPENLLAIFDENEL-ELLMCGTGDINVSDFKAHAVVVGGSWHFREKVMRWFWAVVSSLTQEELARLLQFTTGSSQLPPGGFAALCPSFQI------------IAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAIS 814
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: K0317_HUMAN (Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12 Identity = 50/149 (33.56%), Postives = 70/149 (46.98%), Query Frame = 1 Query: 16 FYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGG-YSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAIS 459 F +GL +L+ + L +F+ +E +LL G DI V D + + GG + + ++ FW VV +E LL+F T S+ P GF L PSF I I LP+A TC+N L LPTY + L AIS Sbjct: 679 FLKGLNELVPENLLAIFDENEL-ELLMCGTGDISVSDFKAHAVVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPPGGFAALCPSFQI------------IAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAIS 814
BLAST of CX288571 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11 Identity = 46/153 (30.07%), Postives = 66/153 (43.14%), Query Frame = 1 Query: 13 AFYRGLTDLISPSWLKLFNASEFNQLLSGGRHDIDVDDLRKNTRYTGGYSEGSRTIKLFWEVVEGFEPKERCMLLKFVTSCSRAPLLGFKHLQPSFTIHKVACDSSLWAVIGGQDVERLPSASTCYNTLKLPTYKRSSTLKAKLLYAISSNAG 471 AF G + + S + + E + D + L N GY+ S I F ++ F ER + L+F+T + P+ GFK L P FT+ + L A E LPS TC N LKLP Y ++++L AI AG Sbjct: 1332 AFIEGFSKVFSYERMLILFPDELVDIFGRVEEDWSMATLYTNLNAEHGYTMDSSIIHDFISIISAFGKHERRLFLQFLTGSPKLPIGGFKSLNPKFTVVLKHAEDGLTA------DEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAG 1478 The following BLAST results are available for this feature:
BLAST of CX288571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288571 ID=CX288571; Name=CX288571; organism=Citrus clementina; type=EST; length=630bpback to top |