CX288587

Overview
NameCX288587
Unique NameCX288587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCD_RICTY (ADP,ATP carrier protein 4 OS=Rickettsia typhi GN=tlcD PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 44/113 (38.94%), Postives = 72/113 (63.72%), Query Frame = 2
Query:   68 ESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKF 406
            +S + ++SSR+IR +ATL++ YGI+INLVE  WK+     + +P EY++F+G + + TG+ T   +LL   I  + GW  +A ITP+++ +TG+ FF+   F    G  +A F
Sbjct:  283 KSFQMILSSRHIRLIATLLICYGIAINLVEGPWKAAATKIYKTPTEYAAFIGSYLSYTGVFTIFFVLLGSNIVRRIGWFTSAVITPSIVFITGILFFAFNNFEGFAGLIIANF 395          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCE_RICPR (ADP,ATP carrier protein 5 OS=Rickettsia prowazekii GN=tlcE PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLF 373
            MG ++S K++V S+Y+  L     A+G +INLVE  WK+K+K  +P+ N Y+ F   +   TG+A   M ++   +     W VAA I+P ++++TGV FF L++F
Sbjct:  272 MGLIKSFKYIVKSKYLWLLLICSAAFGFAINLVEAVWKAKIKELYPTVNTYAEFNSLYILWTGVAIIVMTIIGNNVMRMHNWFVAAVISPVIIMVTGVLFFGLIVF 377          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCE_RICBR (ADP,ATP carrier protein 5 OS=Rickettsia bellii (strain RML369-C) GN=tlcE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.361e-17
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLF 373
            MG ++S K++V S+Y+  L     A+G +INLVE  WK+K+K  +P+ N Y+ F   +   TG+A   M ++   +     W VAA I+P ++++TGV FF L++F
Sbjct:  272 MGIIKSFKYIVKSKYLWLLLICSAAFGFAINLVEAVWKAKIKELYPTVNTYAEFNSLYILWTGVAIMVMTIIGNNVMRMHNWFVAAVISPVIIMVTGVLFFVLIVF 377          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCE_RICCN (ADP,ATP carrier protein 5 OS=Rickettsia conorii GN=tlcE PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.560e-16
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLF 373
            MG ++S K++  S+Y+  L     A+G +INLVE  WK+K+K  +P+ N Y+ F   +   TG+A   M ++   I     W VAA I+P ++++TG+ FF L++F
Sbjct:  271 MGLIKSFKYIAKSKYLWLLLICSAAFGFAINLVEAVWKAKIKELYPTVNTYAEFNSLYILWTGVAIMVMTIIGNNIMRMHNWFVAAVISPVIIMVTGILFFVLIVF 376          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCE_RICTY (ADP,ATP carrier protein 5 OS=Rickettsia typhi GN=tlcE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.037e-16
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLF 373
            MG ++S K++  S+Y+  L     A+G +INLVE  WK+K+K  +P+ N Y+ F   +   TG+A   M ++   +     W VAA I+P ++++TG+ FF L++F
Sbjct:  272 MGLIKSFKYIAKSKYLWLLLICSAAFGFAINLVEAVWKAKIKELYPTVNTYAEFNSLYILWTGVAIIVMTIIGNNVMRMHNWFVAAVISPVIIMVTGILFFVLIVF 377          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCE_RICFE (ADP,ATP carrier protein 5 OS=Rickettsia felis GN=tlcE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.037e-16
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLF 373
            MG ++S K++  S+Y+  L     A+G +INLVE  WK+K+K  +P+ N Y+ F   +   TG+A   M ++   +     W VAA I+P ++++TG+ FF L++F
Sbjct:  271 MGLIKSFKYIAKSKYLWLLLICSAAFGFAINLVEAVWKAKIKELYPTVNTYAEFNSLYILWTGVAIMVMTIIGNNVMRMHNWFVAAVISPVIIMVTGILFFVLIVF 376          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCB_RICPR (ADP,ATP carrier protein 2 OS=Rickettsia prowazekii GN=tlcB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFG 409
            +  +ES K +++SRY+  +  LV++Y +SINL+E  W SK+K  +P+  ++ S+ G+    TG+ T     L   +   +GW   A ITP ++ + GV FFS  +F   LG  +   G
Sbjct:  277 LSLLESAKIILTSRYLGFICLLVMSYSMSINLIEGLWMSKVKQLYPATKDFISYHGEVLFWTGVLTLVSAFLGSSLIRIYGWFWGAIITPIMMFVAGVMFFSFTIFEQHLGNIVNTLG 394          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCB_RICTY (ADP,ATP carrier protein 2 OS=Rickettsia typhi GN=tlcB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFG 409
            +  +ES K +++SRY+  +  LV++Y +SINL+E  W SK+K  +P+  ++ S+ G+    TG+ T     L   +   +GW   A ITP ++ + GV FFS  +F + LG  +   G
Sbjct:  277 LSLIESAKIILTSRYLGFICLLVMSYSMSINLIEGLWMSKVKQLYPATKDFISYHGEVLFWTGVLTLVSAFLGSSLIRIYGWFWGAIITPIMMFVAGVIFFSFTIFENHLGNIVNTLG 394          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCB_RICFE (ADP,ATP carrier protein 2 OS=Rickettsia felis GN=tlcB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.011e-13
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPL 385
            +  +ES K +++SRY+  +  LV++Y +SI+L+E  W SK+K  +P+  ++ S+ G+    TG+ T     L   +    GW   A ITP ++   GV FFS  +F + L
Sbjct:  277 LSLVESAKVILTSRYLGFICLLVMSYSMSISLIEGLWMSKVKQLYPATKDFISYHGEVFFWTGVLTLVSAFLGSSLIRICGWFWGAIITPIMMFGAGVMFFSFTVFENHL 386          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCB_RICCN (ADP,ATP carrier protein 2 OS=Rickettsia conorii GN=tlcB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 38/118 (32.20%), Postives = 64/118 (54.24%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPLGPALAKFG 409
            +  ++S K +++SRY+  +  LV++Y +SI+L+E  W SK+K  +P+  ++ ++ G     TGI T     L   +    GW   A ITP ++   GV FFS  +F + LG  +   G
Sbjct:  277 LSLVDSAKVILTSRYLGFICLLVMSYSMSISLIEGLWMSKVKQLYPATKDFIAYHGKVFFWTGILTLVSAFLGSSLIRICGWFWGAIITPIMMFGAGVMFFSFTVFENHLGNIVNTLG 394          
The following BLAST results are available for this feature:
BLAST of CX288587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLCD_RICTY1.666e-1838.94ADP,ATP carrier protein 4 OS=Rickettsia typhi GN=t... [more]
TLCE_RICPR3.143e-1737.74ADP,ATP carrier protein 5 OS=Rickettsia prowazekii... [more]
TLCE_RICBR5.361e-1737.74ADP,ATP carrier protein 5 OS=Rickettsia bellii (st... [more]
TLCE_RICCN1.560e-1636.79ADP,ATP carrier protein 5 OS=Rickettsia conorii GN... [more]
TLCE_RICTY2.037e-1635.85ADP,ATP carrier protein 5 OS=Rickettsia typhi GN=t... [more]
TLCE_RICFE2.037e-1635.85ADP,ATP carrier protein 5 OS=Rickettsia felis GN=t... [more]
TLCB_RICPR1.320e-1533.90ADP,ATP carrier protein 2 OS=Rickettsia prowazekii... [more]
TLCB_RICTY1.725e-1533.90ADP,ATP carrier protein 2 OS=Rickettsia typhi GN=t... [more]
TLCB_RICFE8.011e-1333.64ADP,ATP carrier protein 2 OS=Rickettsia felis GN=t... [more]
TLCB_RICCN1.046e-1232.20ADP,ATP carrier protein 2 OS=Rickettsia conorii GN... [more]

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Properties
Property NameValue
Genbank descriptionC02002B01SK IF1 Citrus clementina cDNA clone C02002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288587 ID=CX288587; Name=CX288587; organism=Citrus clementina; type=EST; length=414bp
GAACAATAATGTTGAACTTCCTACCCGTAGTAAGAAGAAGAAGGAGAAGC
CAAAGATGGGAACAATGGAGAGCTTGAAATTCTTGGTGTCTTCAAGATAC
ATTAGGGATCTTGCTACTTTAGTGGTTGCATATGGTATCAGTATTAATCT
AGTTGAGGTTACATGGAAATCGAAGCTCAAGGCTCAGTTCCCAAGTCCGA
ATGAGTATTCTTCCTTTATGGGAGACTTCTCAACAGCTACTGGAATAGCA
ACATTCACGATGATGCTTCTAAGTCAATTTATATTTGATAAATTTGGATG
GGGAGTTGCTGCAAAGATCACACCCACAGTCCTCCTGCTTACAGGAGTTG
GTTTCTTTTCTCTACTATTATTTGGGGATCCTCTGGGACCTGCTCTTGCG
AAGTTCGGAATGAC
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