CX288611

Overview
NameCX288611
Unique NameCX288611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_CHICK (60S ribosomal protein L7 OS=Gallus gallus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 8.738e-31
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            +LIYKRGYGK+NK+RIALTDNS+I + LG+ GIICMED+IHEI TVG +FK  NNFLWPF              H+VEGGDAGNRED IN LI RMN
Sbjct:  150 DLIYKRGYGKINKKRIALTDNSLIRKRLGKLGIICMEDVIHEIYTVGKNFKVVNNFLWPFKLSSPRGGMKKKTIHFVEGGDAGNREDQINRLIRRMN 246          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_YARLI (60S ribosomal protein L7 OS=Yarrowia lipolytica GN=RPL7 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.661e-30
Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIXRMN 291
            +L+YKRGYGK+NKQRI L+DN+IIE+ALG++GIICMEDLIHEI TVGP FK+A+NFLWPF            R   HY+EGG  GNRE+ IN LI   N
Sbjct:  152 QLVYKRGYGKVNKQRIPLSDNAIIEEALGKYGIICMEDLIHEIYTVGPAFKQASNFLWPFKLSNPSGGWGVRRKFKHYIEGGSTGNREENINALIKAQN 250          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_ASHGO (60S ribosomal protein L7 OS=Ashbya gossypii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.811e-29
Identity = 58/99 (58.59%), Postives = 77/99 (77.78%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIXRMN 291
            +L+YKRGYGK+NKQRIAL++NSI+E  LG++GII ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+L+  MN
Sbjct:  145 QLVYKRGYGKINKQRIALSENSIVEANLGKYGIISVDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREEFINKLVKSMN 243          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.068e-28
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRM 288
            +L+YKRGY K++  R+ +TDN+I+EQ+LG+  IIC+EDL HEI TVGPHFKEA NFLWPF             NH+VEGGD GNRED IN L+ +M
Sbjct:  148 DLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7B_YEAST (60S ribosomal protein L7-B OS=Saccharomyces cerevisiae GN=RPL7B PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 2.380e-28
Identity = 55/99 (55.56%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIXRMN 291
            +L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+L+  MN
Sbjct:  146 QLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKAMN 244          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 2.380e-28
Identity = 55/99 (55.56%), Postives = 76/99 (76.77%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIXRMN 291
            +L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE++IN+L+  MN
Sbjct:  146 QLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLVKSMN 244          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.108e-28
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    4 LIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIXRMN 291
            L+YKRG+GK+NKQRIAL+DN+IIE  LG++GI+ +EDLIHEI TVGP+FK+ANNFLWPF            +  H+++GGD GNRE++IN L+ +MN
Sbjct:  145 LVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFINALVKQMN 241          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.924e-28
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAGNREDYINELIXRMN 291
            +L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG  GNRE +IN+L+  MN
Sbjct:  146 QLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.488e-27
Identity = 55/97 (56.70%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIXRM 288
            EL+YKRG+GK+NKQRIAL+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NF+WPF            +  H++EGGDAG R+++IN L+ +M
Sbjct:  154 ELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKM 250          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.998e-27
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIXRM 288
            ELIYKRG+GK+NKQRI L+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NFLWPF            +  H++EGGDAG R+++IN L+ +M
Sbjct:  153 ELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
The following BLAST results are available for this feature:
BLAST of CX288611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL7_CHICK8.738e-3165.9860S ribosomal protein L7 OS=Gallus gallus GN=RPL7 ... [more]
RL7_YARLI9.661e-3062.6360S ribosomal protein L7 OS=Yarrowia lipolytica GN... [more]
RL7_ASHGO2.811e-2958.5960S ribosomal protein L7 OS=Ashbya gossypii GN=RPL... [more]
RL7_CAEEL1.068e-2858.3360S ribosomal protein L7 OS=Caenorhabditis elegans... [more]
RL7B_YEAST2.380e-2855.5660S ribosomal protein L7-B OS=Saccharomyces cerevi... [more]
RL7A_YEAST2.380e-2855.5660S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7_DEBHA3.108e-2858.7660S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL7_CANGA6.924e-2856.5760S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7C_SCHPO4.488e-2756.7060S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7B_SCHPO9.998e-2757.7360S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC02002D04SK IF1 Citrus clementina cDNA clone C02002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288611 ID=CX288611; Name=CX288611; organism=Citrus clementina; type=EST; length=517bp
GAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGC
TTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATGGAATTA
TCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTC
AAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGG
TGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCAGGAA
ACCGTGAAGATTACATCAATGAGCTCATCANAAGGATGAACTAGGCTTCT
GCAGAATATCCTACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTA
AATTTTGGCTTTTAGTGTTTCCTATTATTCCCAGCCTTTTCCCTGGAAGT
TAAGTAGAAACTTTCTTACTTTTTATAACAGTGACAGTGTTGTTATTTTG
GCTTCAGACTGGATTATCATTCCAAATTTTATTTTTTGTTTTCATGTGTT
TTAGTTTCAGTTATGAA
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