CX288611

Overview
NameCX288611
Unique NameCX288611
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.444e-25
Identity = 56/97 (57.73%), Postives = 68/97 (70.10%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQ-HGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRM 288
            ELIYKRG+ K N+QR+ +TDN +IE+ L Q H I C+EDL+HEI TVGP+FK A+NFLWPF             NHYV GGD GNRED IN L+ +M
Sbjct:  155 ELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.216e-25
Identity = 55/95 (57.89%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    4 LIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRM 288
            LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD GNRED IN+L+ RM
Sbjct:  153 LIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.216e-25
Identity = 55/95 (57.89%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    4 LIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRM 288
            LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD GNRED IN+L+ RM
Sbjct:  153 LIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7_DICDI (60S ribosomal protein L7 OS=Dictyostelium discoideum GN=rpl7 PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 9.358e-25
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELIYKRG+ K++ QRI LT N ++E+ LG+ GIIC+ED+IHEI T G HFK+ NN LWPF            +  +++GGDAGNRE  IN LI RMN
Sbjct:  150 ELIYKRGHLKIDGQRIPLTSNDMVEKQLGKFGIICVEDIIHEITTCGKHFKQVNNSLWPFKLNCPRGGFNMKKTPFLQGGDAGNREHLINNLIHRMN 246          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.806e-21
Identity = 50/96 (52.08%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAGNREDYINELIXR 285
            ELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED+IHEI  VG HFKE   FLWPF            +  H+ EG  AG   + INELI +
Sbjct:  152 ELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.890e-17
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNH-YVEGGDAGNREDYINELIXRMN 291
            +LIYK+G   +    + LTDN+IIEQALG+H I+ +EDL++EI  VG HF+E   FL P             +   + EGGD GNRED IN+LI +MN
Sbjct:  150 DLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.210e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELI KRG  K+N + + LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E ++FL PF                 E G  G R D IN+LI ++N
Sbjct:  150 ELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.017e-15
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF                 E G  G R + IN+LI ++N
Sbjct:  150 ELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.941e-15
Identity = 43/97 (44.33%), Postives = 57/97 (58.76%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF                 E G  G R + IN+LI ++N
Sbjct:  150 ELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of CX288611 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.690e-14
Identity = 41/97 (42.27%), Postives = 56/97 (57.73%), Query Frame = 1
Query:    1 ELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIXRMN 291
            ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G +F+  + FL PF                 E G  G R + IN+LI ++N
Sbjct:  151 ELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
The following BLAST results are available for this feature:
BLAST of CX288611 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL7_DROME1.444e-2557.7360S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL72_PARTE3.216e-2557.8960S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE3.216e-2557.8960S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7_DICDI9.358e-2554.6460S ribosomal protein L7 OS=Dictyostelium discoide... [more]
RL7A_SCHPO4.806e-2152.0860S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH1.890e-1746.9460S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_MOUSE4.210e-1745.3660S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_HUMAN3.017e-1544.3360S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PONAB3.941e-1544.3360S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_PIG5.690e-1442.2760S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02002D04SK IF1 Citrus clementina cDNA clone C02002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288611 ID=CX288611; Name=CX288611; organism=Citrus clementina; type=EST; length=517bp
GAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGC
TTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATGGAATTA
TCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTC
AAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGG
TGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCAGGAA
ACCGTGAAGATTACATCAATGAGCTCATCANAAGGATGAACTAGGCTTCT
GCAGAATATCCTACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTA
AATTTTGGCTTTTAGTGTTTCCTATTATTCCCAGCCTTTTCCCTGGAAGT
TAAGTAGAAACTTTCTTACTTTTTATAACAGTGACAGTGTTGTTATTTTG
GCTTCAGACTGGATTATCATTCCAAATTTTATTTTTTGTTTTCATGTGTT
TTAGTTTCAGTTATGAA
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