CX288628

Overview
NameCX288628
Unique NameCX288628
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288628 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  134 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 364
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
BLAST of CX288628 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 2
Query:  134 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 361
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CX288628 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.684e-11
Identity = 36/77 (46.75%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  131 SMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 361
            +M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   27 TMELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of CX288628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBL1_SCHPO1.573e-1751.95Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST5.059e-1652.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
ANUB1_HUMAN1.684e-1146.75AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionC02002E12SK IF1 Citrus clementina cDNA clone C02002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288628 ID=CX288628; Name=CX288628; organism=Citrus clementina; type=EST; length=480bp
AAAGATTTGGCTCTGGAGGTGGCACGGCATAGCCTTTTTAAATAAAGACA
CTGAGTTTCTTTCTTTTTCTGTCTTCAAAGCTTCACCTTTTTTTCTCAAA
GAAGAAGAGTGGGGGAAAAGAAATCAGAGCAGTATGCAGATCTTTGTGAA
GACTTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCAGTGACACCA
TCGATAATGTTAAGGCTAAGATTCAGGACAAGGAAGGCATTCCTCCGGAT
CAGCAGAGATTGATTTTTGCTGGGAAACAATTGGAAGATGGCCGTACTCT
TGCTGATTATAACATTCAGAAGGAGTCAACACTTCACTTGGTCCTGAGGC
TCAGGGGAGGAACTATGATCAAGGTGAAGACACTCACTGGCAAAGAAATT
GAAATTGATATTGAGCCAACTGATACCATTGAACGAATAAAGGAAAGGGT
GGAGGAAAAAGAAGGGATTCCTCCAGTGCA
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