CX288629

Overview
NameCX288629
Unique NameCX288629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_CAEEL (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis elegans GN=Y65B4BR.5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.125e-17
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   73 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            KLG+K + GVSRV ++KSKNILFVI+KPDVFKSP SDTYI+FGEAKIEDL+   Q
Sbjct:   68 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLTQHAQ 122          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_CAEBR (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis briggsae GN=CBG05114 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.125e-17
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   73 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            KLG+K + GVSRV ++KSKNILFVI+KPDVFKSP SDTYI+FGEAKIEDL+   Q
Sbjct:   70 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLTQHAQ 124          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_SCLS1 (Nascent polypeptide-associated complex subunit alpha OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=egd2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.092e-17
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 EGKGD-------GSGXXXXXXXXXXXXXAMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            EG+G+       G+G             ++ KLG+  +PG++RVT+++ KNILFVI+ P+V+KSPTS+TYIVFGEAKIEDL+SQ Q
Sbjct:   33 EGEGEVESGIPAGAGAVVHSRNEKKARKSIAKLGLTRVPGITRVTLRRPKNILFVINNPEVYKSPTSNTYIVFGEAKIEDLNSQAQ 118          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_ASPCL (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus clavatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.092e-17
Identity = 38/58 (65.52%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SPTS+T+I+FGEAKIEDL+SQ Q
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPTSNTWIIFGEAKIEDLNSQAQ 112          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_BOTFB (Nascent polypeptide-associated complex subunit alpha OS=Botryotinia fuckeliana (strain B05.10) GN=egd2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.188e-16
Identity = 38/58 (65.52%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            ++ KLG+  +PG++RVT+++ KNILFVI++P+V+KSPTS+TYIVFGEAKIEDL+SQ Q
Sbjct:   60 SIAKLGLTRVPGITRVTLRRPKNILFVINQPEVYKSPTSNTYIVFGEAKIEDLNSQAQ 117          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_NEOFI (Nascent polypeptide-associated complex subunit alpha OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.645e-16
Identity = 37/58 (63.79%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ Q
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQ 112          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_EMENI (Nascent polypeptide-associated complex subunit alpha OS=Emericella nidulans GN=egd2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.645e-16
Identity = 37/58 (63.79%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ Q
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQ 112          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_COCIM (Nascent polypeptide-associated complex subunit alpha OS=Coccidioides immitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.645e-16
Identity = 37/58 (63.79%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ Q
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQ 114          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_ASPOR (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus oryzae GN=egd2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.645e-16
Identity = 37/58 (63.79%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ Q
Sbjct:   54 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQ 111          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_ASPFU (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus fumigatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.645e-16
Identity = 37/58 (63.79%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ Q
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQ 112          
The following BLAST results are available for this feature:
BLAST of CX288629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NACA_CAEEL3.125e-1774.55Nascent polypeptide-associated complex subunit alp... [more]
NACA_CAEBR3.125e-1774.55Nascent polypeptide-associated complex subunit alp... [more]
NACA_SCLS19.092e-1750.00Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPCL9.092e-1765.52Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOTFB1.188e-1665.52Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEOFI2.645e-1663.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_EMENI2.645e-1663.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_COCIM2.645e-1663.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPOR2.645e-1663.79Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPFU2.645e-1663.79Nascent polypeptide-associated complex subunit alp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002F01SK IF1 Citrus clementina cDNA clone C02002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288629 ID=CX288629; Name=CX288629; organism=Citrus clementina; type=EST; length=244bp
GAAGGGAAAGGAGATGGAAGTGGTCGCTCAAAACAGAGCAGGAGTGAAAA
GAAGAGTCGGAAAGCAATGTTGAAACTTGGAATGAAGCCAATCCCTGGTG
TCAGTCGAGTTACAGTTAAAAAGAGCAAAAATATTTTGTTTGTTATCTCC
AAACCAGATGTTTTCAAGAGTCCTACATCTGACACATACATTGTCTTTGG
GGAAGCAAAGATCGAGGATCTGAGTTCACAACTGCAAACTCAGG
back to top