CX288629

Overview
NameCX288629
Unique NameCX288629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_PHANO (Nascent polypeptide-associated complex subunit alpha OS=Phaeosphaeria nodorum GN=EGD2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.455e-16
Identity = 38/58 (65.52%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K I G++RVT+++ KNILFVI++PDV+KSP+S+T+I+FGEAKIEDL+SQ Q
Sbjct:   57 AIAKLGLKHIDGITRVTLRRPKNILFVINQPDVYKSPSSNTWIIFGEAKIEDLNSQAQ 114          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA2_HUMAN (Nascent polypeptide-associated complex subunit alpha-2 OS=Homo sapiens GN=NACA2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.697e-16
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            AM KLG+  + GV+RVT+ KSKNILFVI+K DV+KSP SD YIVFGEAKI+DLS Q Q
Sbjct:   79 AMSKLGLLQVTGVTRVTIWKSKNILFVITKLDVYKSPASDAYIVFGEAKIQDLSQQAQ 136          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_AJECN (Nascent polypeptide-associated complex subunit alpha OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=EGD2 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.313e-15
Identity = 36/58 (62.07%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ K ILFVI++PDV++SP+S+T+I+FGEAKIEDL+SQ Q
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKGILFVINQPDVYRSPSSNTWIIFGEAKIEDLNSQAQ 114          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_BABDI (Nascent polypeptide-associated complex subunit alpha OS=Babesia divergens PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.240e-15
Identity = 34/51 (66.67%), Postives = 45/51 (88.24%), Query Frame = 1
Query:   73 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLS 225
            KLGMKP+ GV++V +KKSK I FV++KPDV+K P SDTY++FGEAK+ED+S
Sbjct:   48 KLGMKPVDGVTKVCIKKSKQIYFVVNKPDVYKLPNSDTYVIFGEAKVEDMS 98          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_ASPNC (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.925e-15
Identity = 35/58 (60.34%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT+++ KNILFVI++PDV++SP+S+T+I+FGEAKIEDL++  Q
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIEDLNATAQ 112          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_ASPTN (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=egd2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.820e-15
Identity = 35/58 (60.34%), Postives = 53/58 (91.38%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KLG+K +PG++RVT ++ KNILFVI++P+V++SP+S+T+I+FGEAKIEDL++Q Q
Sbjct:   55 AIGKLGLKLVPGITRVTFRRPKNILFVINQPEVYRSPSSNTWIIFGEAKIEDLNAQAQ 112          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_NEUCR (Nascent polypeptide-associated complex subunit alpha OS=Neurospora crassa GN=egd-2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.896e-14
Identity = 35/58 (60.34%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KL ++ +PG++RVT+++ KNILFVI+ P+V+KSP S+TYIVFGEAKIEDL++  Q
Sbjct:   58 AIEKLHLQRVPGITRVTLRRPKNILFVINNPEVYKSPNSNTYIVFGEAKIEDLNASAQ 115          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_CHAGB (Nascent polypeptide-associated complex subunit alpha OS=Chaetomium globosum GN=EGD2 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.234e-14
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KL +  +PG++RVT+++ KNILFVI+ P+V+KSP S+TYIVFGEAKIEDL++  Q
Sbjct:   58 AIEKLHLTRVPGITRVTLRRPKNILFVINNPEVYKSPNSNTYIVFGEAKIEDLNASAQ 115          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_GIBZE (Nascent polypeptide-associated complex subunit alpha OS=Gibberella zeae GN=EGD2 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.204e-14
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KL +  IPG++RVT+++ KNILFVI+ P+V+KSP S+TYIVFGEAKIED+++  Q
Sbjct:   58 ALEKLHLTRIPGITRVTLRRPKNILFVINTPEVYKSPNSNTYIVFGEAKIEDVNAAAQ 115          
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_MAGGR (Nascent polypeptide-associated complex subunit alpha OS=Magnaporthe grisea GN=EGD2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.965e-13
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQ 237
            A+ KL +  + G++RVT+++ KNILFVI+ P+V+KSP S TYIVFGEAKIEDL++  Q
Sbjct:   57 AIEKLHLIRVDGITRVTLRRPKNILFVINNPEVYKSPNSGTYIVFGEAKIEDLNASAQ 114          
The following BLAST results are available for this feature:
BLAST of CX288629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NACA_PHANO3.455e-1665.52Nascent polypeptide-associated complex subunit alp... [more]
NACA2_HUMAN7.697e-1670.69Nascent polypeptide-associated complex subunit alp... [more]
NACA_AJECN1.313e-1562.07Nascent polypeptide-associated complex subunit alp... [more]
NACA_BABDI2.240e-1566.67Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPNC2.925e-1560.34Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPTN3.820e-1560.34Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEUCR1.896e-1460.34Nascent polypeptide-associated complex subunit alp... [more]
NACA_CHAGB3.234e-1460.34Nascent polypeptide-associated complex subunit alp... [more]
NACA_GIBZE7.204e-1460.34Nascent polypeptide-associated complex subunit alp... [more]
NACA_MAGGR7.965e-1358.62Nascent polypeptide-associated complex subunit alp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002F01SK IF1 Citrus clementina cDNA clone C02002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288629 ID=CX288629; Name=CX288629; organism=Citrus clementina; type=EST; length=244bp
GAAGGGAAAGGAGATGGAAGTGGTCGCTCAAAACAGAGCAGGAGTGAAAA
GAAGAGTCGGAAAGCAATGTTGAAACTTGGAATGAAGCCAATCCCTGGTG
TCAGTCGAGTTACAGTTAAAAAGAGCAAAAATATTTTGTTTGTTATCTCC
AAACCAGATGTTTTCAAGAGTCCTACATCTGACACATACATTGTCTTTGG
GGAAGCAAAGATCGAGGATCTGAGTTCACAACTGCAAACTCAGG
back to top