CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOBJ (Prolyl-tRNA synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=proS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 46/142 (32.39%), Postives = 66/142 (46.48%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529
            KE ++   + LK      +R   D  D   PGWKYS +EMKG+PL IEIGPKD+  +Q   VRRDN  K  + +                S+   AK+ RD    +    +EF + +  +   I A WC +   E  ++  T
Sbjct:  303 KEGVLEKAKELKEKLAKVVRVKLDDSDKM-PGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLDIIHNSMLEEAKKTRDEKTYVATNMEEFEDTIENKPGFIKAMWCGDRACEDKIREVT 443          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOBH (Prolyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=proS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 46/142 (32.39%), Postives = 66/142 (46.48%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529
            KE ++   + LK      +R   D  D   PGWKYS +EMKG+PL IEIGPKD+  +Q   VRRDN  K  + +                S+   AK+ RD    +    +EF + +  +   I A WC +   E  ++  T
Sbjct:  303 KEGVLEKAKELKEKLAKVVRVKLDDSDKM-PGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLDIIHNSMLEEAKKTRDEKTYVATNMEEFEDTIENKPGFIKAMWCGDRACEDKIREVT 443          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOB1 (Prolyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=proS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 46/142 (32.39%), Postives = 66/142 (46.48%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529
            KE ++   + LK      +R   D  D   PGWKYS +EMKG+PL IEIGPKD+  +Q   VRRDN  K  + +                S+   AK+ RD    +    +EF + +  +   I A WC +   E  ++  T
Sbjct:  303 KEGVLEKAKELKEKLAKVVRVKLDDSDKM-PGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLDIIHNSMLEEAKKTRDEKTYVATNMEEFEDTIENKPGFIKAMWCGDRACEDKIREVT 443          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METB6 (Prolyl-tRNA synthetase OS=Methanoregula boonei (strain 6A8) GN=proS PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.470e-13
Identity = 39/145 (26.90%), Postives = 65/145 (44.83%), Query Frame = 2
Query:  110 EFLMHALQLLKN*CE-AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEM 541
            E ++ A   LKN  E AG+R   D  D   PG KY  WE++GVPL +E+GP+DL + +  AV R  G K  + + +              ++   A +   + +    T D    AL + K+ +  WC +      ++ +    +
Sbjct:  303 EDVLAAAGKLKNDLENAGLRVTLDTRD-LRPGAKYYWWEIRGVPLRLELGPRDLDSGKAMAVTR-TGEKTTICLANAAEDTTSILTGITDAIRAKAGEHTKSHLCTTHTMDGLDIALNEGKVAVVHWCRDRTCGDTIEEKANSSL 445          

HSP 2 Score: 40.817 bits (94), Expect = 2.470e-13
Identity = 15/27 (55.56%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++ +HGDDKGL+LPP VA+ QV+ +P+
Sbjct:  270 LISLHGDDKGLILPPTVATFQVVIVPI 296          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_MYCH2 (Prolyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain 232) GN=proS PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.208e-13
Identity = 42/142 (29.58%), Postives = 67/142 (47.18%), Query Frame = 2
Query:  104 LKEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529
            +K F     ++LKN   A I    D  D    G+K ++ E+ G P+ IEIGP ++ N+Q+  VRRDN  K    +                 LF  AK R       V + +EF  A+   K ++AP+ +  E E++++ +T
Sbjct:  303 VKIFAKKIAKILKN---AKISYKIDDTDQQI-GYKINNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILEQIQADLFKKAKIRLLENTVFVNSINEFEHAVKNNKFVIAPFSESPEREQEIQEKT 440          

HSP 2 Score: 36.1946 bits (82), Expect = 3.208e-13
Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQV 69
            +VMVH DD GL+ PPK+A +QV
Sbjct:  269 IVMVHSDDNGLIFPPKIAPIQV 290          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_MYCPU (Prolyl-tRNA synthetase OS=Mycoplasma pulmonis GN=proS PE=3 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 3.209e-13
Identity = 44/148 (29.73%), Postives = 72/148 (48.65%), Query Frame = 2
Query:  104 LKEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWC-----DEEEVEKDVKARTK 532
            +++F+    ++LK       R N D  D  + G+K S  E++GVPL IEIGP+D  N+QV  VRRD   K  + +                +L+  AK R    I  +  ++EF + +   K +++P C      EEE++K+  A  +
Sbjct:  303 IEKFVNQVEKILKK----PFRVNVDRSDK-TLGFKASQSEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIVKVSRETLQAIHNNLYEQAKIRLKNNIVEINDYEEFKQEIANHKFVISPLCCTTAEAEEEIQKETGATAR 445          

HSP 2 Score: 30.8018 bits (68), Expect = 3.209e-13
Identity = 10/22 (45.45%), Postives = 18/22 (81.82%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQV 69
            ++M HGD++G+++PP VA  Q+
Sbjct:  269 IIMTHGDNRGIIIPPFVAPCQI 290          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_DEIGD (Prolyl-tRNA synthetase OS=Deinococcus geothermalis (strain DSM 11300) GN=proS PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 4.163e-13
Identity = 34/125 (27.20%), Postives = 50/125 (40.00%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            G+R   D  +  + G+KY+ WE+KGVP+ IE+GP+DL    V    R+   K  LP                  L   A            +++E   A+     + A  C   E E  +K  TK
Sbjct:  332 GLRVKVDRREGVTNGFKYNDWELKGVPVRIELGPRDLEQGVVVVKNRNAEEKETLPREEAIRGMANRLDSIHNWLLQRATDFLLTHTVPADSYEELKNAIEHGNWVRAFHCGNAECEAQIKEDTK 456          

HSP 2 Score: 44.669 bits (104), Expect = 4.163e-13
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++M HGDD GL++PP++A +QV+ IPV  K+      FD   A  EKL
Sbjct:  282 IIMTHGDDFGLIMPPRIAPIQVVVIPVSRKEN-----FDQMVAEGEKL 324          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_AYWBP (Prolyl-tRNA synthetase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=proS PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 5.414e-13
Identity = 29/94 (30.85%), Postives = 48/94 (51.06%), Query Frame = 2
Query:  182 IDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQ 463
            + + + GWK+S +E+KGVPL IEIG + L ND+V   +R N AK ++ +                +++  A Q  +   +   T++EF   L Q
Sbjct:  326 LQDKTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKIKDFPSQIPQLFETMHNNMYQKALQHLEQNRKQATTYEEFKTYLKQ 419          

HSP 2 Score: 42.3578 bits (98), Expect = 5.414e-13
Identity = 17/47 (36.17%), Postives = 32/47 (68.09%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEK 144
            ++MVH DD+GL+LPP VA +Q++ IP+  +D   + + +   + ++K
Sbjct:  272 LIMVHSDDEGLVLPPYVAPMQIVIIPLQTQDESVKQVSENLFSILQK 318          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METVS (Prolyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=proS PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.187e-12
Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 2
Query:  197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVK 430
            PG KY+ WE+KGVPL IEIGP+D+   +   VRRDNG K+ +   +              SL   A ++ +  I +++
Sbjct:  321 PGRKYNDWEIKGVPLRIEIGPRDIEEGKAVIVRRDNGQKMTVEAFNILNEVEKTFEDYKASLLQKATEKLEKYITVIE 398          

HSP 2 Score: 36.965 bits (84), Expect = 1.187e-12
Identity = 13/30 (43.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYK 93
            ++ +HGD+KGL++P  VA +Q++ IP+ +K
Sbjct:  260 LIAIHGDEKGLVIPIDVAPIQIVLIPLLFK 289          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_ARCFU (Prolyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=proS PE=3 SV=2)

HSP 1 Score: 47.7506 bits (112), Expect = 2.000e-12
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++ VHGDD GL+LP +VA VQ++ IP+ YK  + + + +AC    EKL
Sbjct:  265 LISVHGDDLGLVLPFEVAPVQIVIIPILYKGKE-EAVMEACRKLAEKL 311          

HSP 2 Score: 44.2838 bits (103), Expect = 2.000e-12
Identity = 32/117 (27.35%), Postives = 48/117 (41.03%), Query Frame = 2
Query:  197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXS-LFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMG 544
            PG KY  WE+KGVP+  EIGP+D          RD   K ++P+                  L  AA +R    ++ V+   E  E  G   ++    C +E+    V+   K  +G
Sbjct:  325 PGAKYYKWELKGVPIRFEIGPRDAEKGVAVVSFRDEKRKFEVPLDEVDEGKVLEWARELKQRLRNAAAERMAEKVKFVENTGEIEEWGG---VVAVYLCSDEDCGHSVEEHGKSLLG 438          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYP_CLOBJ1.884e-1332.39Prolyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYP_CLOBH1.884e-1332.39Prolyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYP_CLOB11.884e-1332.39Prolyl-tRNA synthetase OS=Clostridium botulinum (s... [more]
SYP_METB62.470e-1326.90Prolyl-tRNA synthetase OS=Methanoregula boonei (st... [more]
SYP_MYCH23.208e-1329.58Prolyl-tRNA synthetase OS=Mycoplasma hyopneumoniae... [more]
SYP_MYCPU3.209e-1329.73Prolyl-tRNA synthetase OS=Mycoplasma pulmonis GN=p... [more]
SYP_DEIGD4.163e-1327.20Prolyl-tRNA synthetase OS=Deinococcus geothermalis... [more]
SYP_AYWBP5.414e-1330.85Prolyl-tRNA synthetase OS=Aster yellows witches'-b... [more]
SYP_METVS1.187e-1235.90Prolyl-tRNA synthetase OS=Methanococcus vannielii ... [more]
SYP_ARCFU2.000e-1245.83Prolyl-tRNA synthetase OS=Archaeoglobus fulgidus G... [more]

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Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
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