CX288634
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOBJ (Prolyl-tRNA synthetase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=proS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 46/142 (32.39%), Postives = 66/142 (46.48%), Query Frame = 2 Query: 107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529 KE ++ + LK +R D D PGWKYS +EMKG+PL IEIGPKD+ +Q VRRDN K + + S+ AK+ RD + +EF + + + I A WC + E ++ T Sbjct: 303 KEGVLEKAKELKEKLAKVVRVKLDDSDKM-PGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLDIIHNSMLEEAKKTRDEKTYVATNMEEFEDTIENKPGFIKAMWCGDRACEDKIREVT 443
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOBH (Prolyl-tRNA synthetase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=proS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 46/142 (32.39%), Postives = 66/142 (46.48%), Query Frame = 2 Query: 107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529 KE ++ + LK +R D D PGWKYS +EMKG+PL IEIGPKD+ +Q VRRDN K + + S+ AK+ RD + +EF + + + I A WC + E ++ T Sbjct: 303 KEGVLEKAKELKEKLAKVVRVKLDDSDKM-PGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLDIIHNSMLEEAKKTRDEKTYVATNMEEFEDTIENKPGFIKAMWCGDRACEDKIREVT 443
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CLOB1 (Prolyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=proS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 46/142 (32.39%), Postives = 66/142 (46.48%), Query Frame = 2 Query: 107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVKART 529 KE ++ + LK +R D D PGWKYS +EMKG+PL IEIGPKD+ +Q VRRDN K + + S+ AK+ RD + +EF + + + I A WC + E ++ T Sbjct: 303 KEGVLEKAKELKEKLAKVVRVKLDDSDKM-PGWKYSEYEMKGIPLRIEIGPKDIEKNQAVLVRRDNREKTIVSLDEIEIKVQEMLDIIHNSMLEEAKKTRDEKTYVATNMEEFEDTIENKPGFIKAMWCGDRACEDKIREVT 443
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METB6 (Prolyl-tRNA synthetase OS=Methanoregula boonei (strain 6A8) GN=proS PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 2.470e-13 Identity = 39/145 (26.90%), Postives = 65/145 (44.83%), Query Frame = 2 Query: 110 EFLMHALQLLKN*CE-AGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEM 541 E ++ A LKN E AG+R D D PG KY WE++GVPL +E+GP+DL + + AV R G K + + + ++ A + + + T D AL + K+ + WC + ++ + + Sbjct: 303 EDVLAAAGKLKNDLENAGLRVTLDTRD-LRPGAKYYWWEIRGVPLRLELGPRDLDSGKAMAVTR-TGEKTTICLANAAEDTTSILTGITDAIRAKAGEHTKSHLCTTHTMDGLDIALNEGKVAVVHWCRDRTCGDTIEEKANSSL 445 HSP 2 Score: 40.817 bits (94), Expect = 2.470e-13 Identity = 15/27 (55.56%), Postives = 23/27 (85.19%), Query Frame = 1 Query: 4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84 ++ +HGDDKGL+LPP VA+ QV+ +P+ Sbjct: 270 LISLHGDDKGLILPPTVATFQVVIVPI 296
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_MYCH2 (Prolyl-tRNA synthetase OS=Mycoplasma hyopneumoniae (strain 232) GN=proS PE=3 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 3.208e-13 Identity = 42/142 (29.58%), Postives = 67/142 (47.18%), Query Frame = 2 Query: 104 LKEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKART 529 +K F ++LKN A I D D G+K ++ E+ G P+ IEIGP ++ N+Q+ VRRDN K + LF AK R V + +EF A+ K ++AP+ + E E++++ +T Sbjct: 303 VKIFAKKIAKILKN---AKISYKIDDTDQQI-GYKINNSEVHGAPIRIEIGPNEVKNNQICLVRRDNHQKFFFNIDLLKEKCRKILEQIQADLFKKAKIRLLENTVFVNSINEFEHAVKNNKFVIAPFSESPEREQEIQEKT 440 HSP 2 Score: 36.1946 bits (82), Expect = 3.208e-13 Identity = 14/22 (63.64%), Postives = 18/22 (81.82%), Query Frame = 1 Query: 4 MVMVHGDDKGLMLPPKVASVQV 69 +VMVH DD GL+ PPK+A +QV Sbjct: 269 IVMVHSDDNGLIFPPKIAPIQV 290
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_MYCPU (Prolyl-tRNA synthetase OS=Mycoplasma pulmonis GN=proS PE=3 SV=2) HSP 1 Score: 63.929 bits (154), Expect = 3.209e-13 Identity = 44/148 (29.73%), Postives = 72/148 (48.65%), Query Frame = 2 Query: 104 LKEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWC-----DEEEVEKDVKARTK 532 +++F+ ++LK R N D D + G+K S E++GVPL IEIGP+D N+QV VRRD K + + +L+ AK R I + ++EF + + K +++P C EEE++K+ A + Sbjct: 303 IEKFVNQVEKILKK----PFRVNVDRSDK-TLGFKASQSEIQGVPLRIEIGPRDFENNQVTLVRRDTLEKQSVSINDIVKVSRETLQAIHNNLYEQAKIRLKNNIVEINDYEEFKQEIANHKFVISPLCCTTAEAEEEIQKETGATAR 445 HSP 2 Score: 30.8018 bits (68), Expect = 3.209e-13 Identity = 10/22 (45.45%), Postives = 18/22 (81.82%), Query Frame = 1 Query: 4 MVMVHGDDKGLMLPPKVASVQV 69 ++M HGD++G+++PP VA Q+ Sbjct: 269 IIMTHGDNRGIIIPPFVAPCQI 290
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_DEIGD (Prolyl-tRNA synthetase OS=Deinococcus geothermalis (strain DSM 11300) GN=proS PE=3 SV=1) HSP 1 Score: 49.6766 bits (117), Expect = 4.163e-13 Identity = 34/125 (27.20%), Postives = 50/125 (40.00%), Query Frame = 2 Query: 158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532 G+R D + + G+KY+ WE+KGVP+ IE+GP+DL V R+ K LP L A +++E A+ + A C E E +K TK Sbjct: 332 GLRVKVDRREGVTNGFKYNDWELKGVPVRIELGPRDLEQGVVVVKNRNAEEKETLPREEAIRGMANRLDSIHNWLLQRATDFLLTHTVPADSYEELKNAIEHGNWVRAFHCGNAECEAQIKEDTK 456 HSP 2 Score: 44.669 bits (104), Expect = 4.163e-13 Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1 Query: 4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147 ++M HGDD GL++PP++A +QV+ IPV K+ FD A EKL Sbjct: 282 IIMTHGDDFGLIMPPRIAPIQVVVIPVSRKEN-----FDQMVAEGEKL 324
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_AYWBP (Prolyl-tRNA synthetase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=proS PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 5.414e-13 Identity = 29/94 (30.85%), Postives = 48/94 (51.06%), Query Frame = 2 Query: 182 IDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQ 463 + + + GWK+S +E+KGVPL IEIG + L ND+V +R N AK ++ + +++ A Q + + T++EF L Q Sbjct: 326 LQDKTAGWKFSQYELKGVPLRIEIGKRGLENDEVTIFQRYNFAKQNIKIKDFPSQIPQLFETMHNNMYQKALQHLEQNRKQATTYEEFKTYLKQ 419 HSP 2 Score: 42.3578 bits (98), Expect = 5.414e-13 Identity = 17/47 (36.17%), Postives = 32/47 (68.09%), Query Frame = 1 Query: 4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEK 144 ++MVH DD+GL+LPP VA +Q++ IP+ +D + + + + ++K Sbjct: 272 LIMVHSDDEGLVLPPYVAPMQIVIIPLQTQDESVKQVSENLFSILQK 318
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METVS (Prolyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=proS PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.187e-12 Identity = 28/78 (35.90%), Postives = 42/78 (53.85%), Query Frame = 2 Query: 197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVK 430 PG KY+ WE+KGVPL IEIGP+D+ + VRRDNG K+ + + SL A ++ + I +++ Sbjct: 321 PGRKYNDWEIKGVPLRIEIGPRDIEEGKAVIVRRDNGQKMTVEAFNILNEVEKTFEDYKASLLQKATEKLEKYITVIE 398 HSP 2 Score: 36.965 bits (84), Expect = 1.187e-12 Identity = 13/30 (43.33%), Postives = 24/30 (80.00%), Query Frame = 1 Query: 4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYK 93 ++ +HGD+KGL++P VA +Q++ IP+ +K Sbjct: 260 LIAIHGDEKGLVIPIDVAPIQIVLIPLLFK 289
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_ARCFU (Prolyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=proS PE=3 SV=2) HSP 1 Score: 47.7506 bits (112), Expect = 2.000e-12 Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 Query: 4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147 ++ VHGDD GL+LP +VA VQ++ IP+ YK + + + +AC EKL Sbjct: 265 LISVHGDDLGLVLPFEVAPVQIVIIPILYKGKE-EAVMEACRKLAEKL 311 HSP 2 Score: 44.2838 bits (103), Expect = 2.000e-12 Identity = 32/117 (27.35%), Postives = 48/117 (41.03%), Query Frame = 2 Query: 197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXS-LFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEMG 544 PG KY WE+KGVP+ EIGP+D RD K ++P+ L AA +R ++ V+ E E G ++ C +E+ V+ K +G Sbjct: 325 PGAKYYKWELKGVPIRFEIGPRDAEKGVAVVSFRDEKRKFEVPLDEVDEGKVLEWARELKQRLRNAAAERMAEKVKFVENTGEIEEWGG---VVAVYLCSDEDCGHSVEEHGKSLLG 438 The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 136
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bpback to top |